PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G50490.1
Common NameMBA10.4, NFYC5, NF-YC5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 186aa    MW: 20399.8 Da    PI: 4.3662
Description nuclear factor Y, subunit C5
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G50490.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.51.7e-52171161100
        NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                  qlksfw+k +e + ++knhe+P++rik+i+k+d+dv+mi+aeaP+llskace+f+++lt+rswlha+e++r t++ksd++a+v++t+ifdfl d+vp+
  AT5G50490.1  17 QLKSFWSKGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDVPK 114
                  89************************************************************************************************ PP

        NF-YC  99 de 100
                  de
  AT5G50490.1 115 DE 116
                  98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.2E-282108IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.8E-283199IPR009072Histone-fold
PfamPF008083.7E-173699IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MENNNNNHQQ PPKDNEQLKS FWSKGMEGDL NVKNHEFPIS RIKRIMKFDP DVSMIAAEAP  60
NLLSKACEMF VMDLTMRSWL HAQESNRLTI RKSDVDAVVS QTVIFDFLRD DVPKDEGEPV  120
VAAADPVDDV ADHVAVPDLN NEELPPGTVI GTPVCYGLGI HAPHPQMPGA WTEEDATGAN  180
GGNGGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-3024114595NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G50490
AtGenExpressAT5G50490
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescences and flowers. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G50490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G09030, AT1G21970
IntActSearch Q9FGP6
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G50490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256190.0AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199860.11e-137nuclear factor Y, subunit C5
SwissprotQ9FGP61e-138NFYC5_ARATH; Nuclear transcription factor Y subunit C-5
TrEMBLC0SVT31e-135C0SVT3_ARATH; Uncharacterized protein At5g50490 (Fragment)
STRINGAT5G50490.11e-136(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17675510
Representative plantOGRP31517117
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Gusmaroli G,Tonelli C,Mantovani R
    Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana.
    Gene, 2001. 264(2): p. 173-85
    [PMID:11250072]
  3. Gusmaroli G,Tonelli C,Mantovani R
    Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits.
    Gene, 2002. 283(1-2): p. 41-8
    [PMID:11867211]
  4. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]
  5. Jenik PD,Jurkuta RE,Barton MK
    Interactions between the cell cycle and embryonic patterning in Arabidopsis uncovered by a mutation in DNA polymerase epsilon.
    Plant Cell, 2005. 17(12): p. 3362-77
    [PMID:16278345]
  6. Wenkel S, et al.
    CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.
    Plant Cell, 2006. 18(11): p. 2971-84
    [PMID:17138697]
  7. Calvenzani V, et al.
    Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits.
    PLoS ONE, 2012. 7(8): p. e42902
    [PMID:22912760]
  8. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]