PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G50820.1
Common Nameanac097, NAC097
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 193aa    MW: 22777.6 Da    PI: 4.6841
Description NAC domain containing protein 97
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G50820.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.2e-31171381128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + +ev++++g+
  AT5G50820.1  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVMEAGGR 104
                  79*************************999..49*************6...56789*******99875....899********98766.777777555 PP

          NAM  99 l....vglkktLvfykgrapkgektdWvmheyrl 128
                  +     g +kt++f+ g++p+g+ t W+m e+rl
  AT5G50820.1 105 DcihlEGRRKTFAFFIGKKPRGTITPWIMYEFRL 138
                  556669**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-337166IPR003441NAC domain
PROSITE profilePS5100532.30817167IPR003441NAC domain
PfamPF023654.3E-1818138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME AGGRDCIHLE GRRKTFAFFI  120
GKKPRGTITP WIMYEFRLLS SRATRWSSSP LPRGEVGKWR AVKVVVKEEN DEEMVEDEHE  180
SDESDGEEVI QSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-191513915143NO APICAL MERISTEM PROTEIN
1ut4_B6e-191513915143NO APICAL MERISTEM PROTEIN
1ut7_A6e-191513915143NO APICAL MERISTEM PROTEIN
1ut7_B6e-191513915143NO APICAL MERISTEM PROTEIN
4dul_A6e-191513915143NAC domain-containing protein 19
4dul_B6e-191513915143NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453590970.0
Genevisible248469_at0.0
Expression AtlasAT5G50820-
AtGenExpressAT5G50820-
ATTED-IIAT5G50820-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G50820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G50820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199895.31e-140NAC domain containing protein 97
TrEMBLA0A178UQH21e-138A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ11e-138Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGAT5G50820.11e-139(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Lall S,Nettleton D,DeCook R,Che P,Howell SH
    Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis.
    Genetics, 2004. 167(4): p. 1883-92
    [PMID:15342526]
  4. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]