PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G51790.1

Common Name

BHLH120, EN4, MIO24.8

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 204aa MW: 22995.3 Da PI: 10.2398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G51790.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.3e-08	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP ++K ++ + Av +Ik+ q AT5G51790.1 28 KLLHRNIERQRRQEMAILFASLRSQLPLkY---IKGKRAMSDHVNGAVSFIKDTQ 79 567999********************77...9999999*********9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.11E-12	23	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.50E-7	24	83	No hit	No description
PROSITE profile	PS50888	11.299	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	28	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	28	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006357	Biological Process	regulation of transcription from RNA polymerase II promoter
GO:0090575	Cellular Component	RNA polymerase II transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNPSNNPKKT RHQSHMPQER DETKKEKKLL HRNIERQRRQ EMAILFASLR SQLPLKYIKG 60 KRAMSDHVNG AVSFIKDTQT RIKDLSARRD ELKREIGDPT SLTGSGSGSG SSRSEPASVM 120 VQPCVSGFEV VVSSLASGLE AWPLSRVLEV LHGQGLEVIS SLTARVNERL MYTIQVEVNS 180 FDCFDLAWLQ QKLIEQLVLS TTRH

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	334188325	0.0
Expression Atlas	AT5G51790	-
AtGenExpress	AT5G51790	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G51790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G51790

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493789	0.0	AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001332480.1	1e-149	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	NP_199992.2	1e-150	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9FLI0	1e-151	BH120_ARATH; Transcription factor bHLH120
TrEMBL	A0A1P8BH39	1e-148	A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	AT5G51790.1	1e-149	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67
Representative plant	OGRP1638	8	38

Link Out ? help Back to Top
Phytozome	AT5G51790.1
Entrez Gene	835253
iHOP	AT5G51790
wikigenes	AT5G51790

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Heim MA, et al. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] Toledo-Ortiz G,Huq E,Quail PH The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] Bailey PC, et al. Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 2003. 15(11): p. 2497-502 [PMID:14600211] De Paepe A,Vuylsteke M,Van Hummelen P,Zabeau M,Van Der Straeten D Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. Plant J., 2004. 39(4): p. 537-59 [PMID:15272873] Rehrauer H, et al. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol., 2010. 152(2): p. 487-99 [PMID:20032078] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]