PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G60830.1

Common Name

AtbZIP70, bZIP70

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 206aa MW: 23914.7 Da PI: 6.9174

Description

basic leucine-zipper 70

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G60830.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45	2.4e-14	69	129	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e +r+rr+ +NRe+ArrsR RKk++ieeL++ v++L N+ L +++ +l + + +e+ AT5G60830.1 69 EERRARRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQILQEN 129 678*******************************************999999988888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-14	67	131	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-12	69	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.358	69	132	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.44E-11	71	123	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-12	71	127	No hit	No description
CDD	cd14702	3.37E-17	72	123	No hit	No description
PROSITE pattern	PS00036	0	74	89	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MESSSVHRSH CFDILDGVPL HDDHFNSAFL PNTDFNVHLQ SNVSTRINNQ SHLDPNAENI 60 FHNEGLAPEE RRARRMVSNR ESARRSRMRK KKQIEELQQQ VEQLMMLNHH LSEKVINLLE 120 SNHQILQENS QLKEKVSSFH LLMADVLLPM RNAESNINDR NVNYLRGEPS NRPTNSPFAS 180 STMIDAMYAT SDYYSSNYLL AFVCRY

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	18424401	0.0
Expression Atlas	AT5G60830	-
AtGenExpress	AT5G60830	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G60830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G60830

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	0.0	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_200891.1	1e-151	basic leucine-zipper 70
TrEMBL	A0A178UEP1	1e-150	A0A178UEP1_ARATH; BZIP70
TrEMBL	F4K0H9	1e-150	F4K0H9_ARATH; Basic leucine-zipper 70
STRING	AT5G60830.1	1e-150	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45
Representative plant	OGRP11810	4	5

Link Out ? help Back to Top
Phytozome	AT5G60830.1
Entrez Gene	836204
iHOP	AT5G60830
wikigenes	AT5G60830

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jakoby M, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci., 2002. 7(3): p. 106-11 [PMID:11906833] Deppmann CD, et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res., 2004. 32(11): p. 3435-45 [PMID:15226410] Gao M,Li G,McCombie WR,Quiros CF Comparative analysis of a transposon-rich Brassica oleracea BAC clone with its corresponding sequence in A. thaliana. Theor. Appl. Genet., 2005. 111(5): p. 949-55 [PMID:16044267] Ehlert A, et al. Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors. Plant J., 2006. 46(5): p. 890-900 [PMID:16709202] Deppmann CD,Alvania RS,Taparowsky EJ Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol. Biol. Evol., 2006. 23(8): p. 1480-92 [PMID:16731568] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474]