PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G61600.1

Common Name

ERF104, K11J9.13

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ERF

Protein Properties

Length: 241aa MW: 26825 Da PI: 6.6874

Description

ethylene response factor 104

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G61600.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	1e-18	87	137	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ta eA +a+++a+ +l+g AT5G61600.1 87 HYRGVRRRP-WGKYAAEIRDP---NkKGCRIWLGTYDTAVEAGRAYDQAAFQLRG 137 7******.******9...4345***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.7E-31	86	145	IPR001471	AP2/ERF domain
Pfam	PF00847	3.4E-13	87	137	IPR001471	AP2/ERF domain
SMART	SM00380	4.1E-34	87	151	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-22	87	147	IPR016177	DNA-binding domain
CDD	cd00018	2.50E-29	87	145	No hit	No description
PROSITE profile	PS51032	23.894	87	145	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-13	88	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-13	127	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000013	anatomy	cauline leaf
PO:0000037	anatomy	shoot apex
PO:0000230	anatomy	inflorescence meristem
PO:0000293	anatomy	guard cell
PO:0008019	anatomy	leaf lamina base
PO:0009005	anatomy	root
PO:0009006	anatomy	shoot system
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009030	anatomy	carpel
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0009047	anatomy	stem
PO:0009052	anatomy	flower pedicel
PO:0020030	anatomy	cotyledon
PO:0020038	anatomy	petiole
PO:0020100	anatomy	hypocotyl
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0025281	anatomy	pollen
PO:0001054	developmental stage	vascular leaf senescent stage
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001081	developmental stage	mature plant embryo stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007064	developmental stage	LP.12 twelve leaves visible stage
PO:0007095	developmental stage	LP.08 eight leaves visible stage
PO:0007098	developmental stage	LP.02 two leaves visible stage
PO:0007103	developmental stage	LP.10 ten leaves visible stage
PO:0007115	developmental stage	LP.04 four leaves visible stage
PO:0007123	developmental stage	LP.06 six leaves visible stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MATKQEALAI DFISQHLLTD FVSMETDHPS LFTNQLHNFH SETGPRTITN QSPKPNSTLN 60 QRKPPLPNLS VSRTVSTKTE KEEEERHYRG VRRRPWGKYA AEIRDPNKKG CRIWLGTYDT 120 AVEAGRAYDQ AAFQLRGRKA ILNFPLDVRV TSETCSGEGV IGLGKRKRDK GSPPEEEKAA 180 RVKVEEEESN TSETTEAEVE PVVPLTPSSW MGFWDVGAGD GIFSIPPLSP TSPNFSVISV 240 T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	6e-27	86	148	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	1e-26	84	152	11	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.47568	0.0	leaf\| root\| seed

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	247543_at	0.0
Expression Atlas	AT5G61600	-
AtGenExpress	AT5G61600	-
ATTED-II	AT5G61600	-

Functional Description ? help Back to Top
Source	Description
TAIR	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00572	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G61600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Regulation -- Hormone ? help Back to Top
Source	Hormone
AHD	ethylene

Interaction ? help Back to Top
Source	Intact With
IntAct	Search Q9FKG1

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G61600

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB012239	0.0	AB012239.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K11J9.
GenBank	AK230296	0.0	AK230296.1 Arabidopsis thaliana mRNA for xyloglucan endo-1,4-beta-D-glucanase precursor, complete cds, clone: RAFL24-09-C23.
GenBank	AY054228	0.0	AY054228.1 Arabidopsis thaliana AT5g61600/k11j9_120 mRNA, complete cds.
GenBank	AY142636	0.0	AY142636.1 Arabidopsis thaliana putative DNA binding protein (At5g61600) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_200968.1	1e-180	ethylene response factor 104
Swissprot	Q9FKG1	0.0	EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBL	A0A178UIR4	1e-177	A0A178UIR4_ARATH; ERF104
STRING	AT5G61600.1	1e-179	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13464	18	28
Representative plant	OGRP6	16	1718

Link Out ? help Back to Top
Phytozome	AT5G61600.1
Entrez Gene	836281
iHOP	AT5G61600
wikigenes	AT5G61600

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Gutierrez RA,Ewing RM,Cherry JM,Green PJ Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Proc. Natl. Acad. Sci. U.S.A., 2002. 99(17): p. 11513-8 [PMID:12167669] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Ko JH,Han KH,Park S,Yang J Plant body weight-induced secondary growth in Arabidopsis and its transcription phenotype revealed by whole-transcriptome profiling. Plant Physiol., 2004. 135(2): p. 1069-83 [PMID:15194820] Guan Y,Nothnagel EA Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. Plant Physiol., 2004. 135(3): p. 1346-66 [PMID:15235117] Lu Y,Zhu J,Liu P A two-step strategy for detecting differential gene expression in cDNA microarray data. Curr. Genet., 2005. 47(2): p. 121-31 [PMID:15688252] Lee D,Polisensky DH,Braam J Genome-wide identification of touch- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes. New Phytol., 2005. 165(2): p. 429-44 [PMID:15720654] Tohge T, et al. Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J., 2005. 42(2): p. 218-35 [PMID:15807784] Cominelli E, et al. A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance. Curr. Biol., 2005. 15(13): p. 1196-200 [PMID:16005291] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nakano T,Suzuki K,Fujimura T,Shinshi H Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] Cao D,Cheng H,Wu W,Soo HM,Peng J Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. Plant Physiol., 2006. 142(2): p. 509-25 [PMID:16920880] Manavella PA, et al. Cross-talk between ethylene and drought signalling pathways is mediated by the sunflower Hahb-4 transcription factor. Plant J., 2006. 48(1): p. 125-37 [PMID:16972869] Zhu Y, et al. Arabidopsis NRP1 and NRP2 encode histone chaperones and are required for maintaining postembryonic root growth. Plant Cell, 2006. 18(11): p. 2879-92 [PMID:17122067] Horiuchi J, et al. The floral volatile, methyl benzoate, from snapdragon (Antirrhinum majus) triggers phytotoxic effects in Arabidopsis thaliana. Planta, 2007. 226(1): p. 1-10 [PMID:17216481] Osuna D, et al. Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. Plant J., 2007. 49(3): p. 463-91 [PMID:17217462] Culligan KM,Robertson CE,Foreman J,Doerner P,Britt AB ATR and ATM play both distinct and additive roles in response to ionizing radiation. Plant J., 2006. 48(6): p. 947-61 [PMID:17227549] Usadel B, et al. Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. Plant Physiol., 2008. 146(4): p. 1834-61 [PMID:18305208] Ferreira FJ,Guo C,Coleman JR Reduction of plastid-localized carbonic anhydrase activity results in reduced Arabidopsis seedling survivorship. Plant Physiol., 2008. 147(2): p. 585-94 [PMID:18434607] Bethke G, et al. Flg22 regulates the release of an ethylene response factor substrate from MAP kinase 6 in Arabidopsis thaliana via ethylene signaling. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(19): p. 8067-72 [PMID:19416906] Bethke G,Scheel D,Lee J Sometimes new results raise new questions: the question marks between mitogen-activated protein kinase and ethylene signaling. Plant Signal Behav, 2009. 4(7): p. 672-4 [PMID:19820303] Gaudinier A, et al. Enhanced Y1H assays for Arabidopsis. Nat. Methods, 2011. 8(12): p. 1053-5 [PMID:22037706] Etchells JP,Provost CM,Turner SR Plant vascular cell division is maintained by an interaction between PXY and ethylene signalling. PLoS Genet., 2012. 8(11): p. e1002997 [PMID:23166504] Moore M,Vogel M,Dietz K The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(10): p. 976479 [PMID:25482793]