PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G67000.1
Common NameERF122, K8A10.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 184aa    MW: 20614.2 Da    PI: 9.5052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G67000.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.78.1e-15119169155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ykGVr ++ +g+W+AeI+dp+    +  r +lg+f tae+Aa+ +  a+ +++ 
  AT5G67000.1 119 KKYKGVRKKP-SGKWAAEIWDPR----SkSRRWLGTFLTAEMAAQSYNDAAAEYRA 169
                  59*****999.7*********84....25999*******************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.13E-25119177No hitNo description
SMARTSM003801.5E-20120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-21120175IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15120175IPR016177DNA-binding domain
PROSITE profilePS5103220.35120177IPR001471AP2/ERF domain
PRINTSPR003671.3E-6121132IPR001471AP2/ERF domain
PRINTSPR003671.3E-6143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MLTPFCSSHH LQEKMNSCQS NPTKMDNSEN VLFNDQNENF TLVAPHPSSS YLTRDQEHEI  60
MVSALRQVIS NSGADDASSS NLIITSVPPP DAGPCPLCGV AGCYGCTLQR PHREVKKEKK  120
YKGVRKKPSG KWAAEIWDPR SKSRRWLGTF LTAEMAAQSY NDAAAEYRAR RGKTNGEGIK  180
RRWR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453597610.0
Genevisible247018_at0.0
Expression AtlasAT5G67000-
AtGenExpressAT5G67000-
ATTED-IIAT5G67000-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G67000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G67000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266400.0AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ1457750.0DQ145775.1 Arabidopsis thaliana AP2/EREBP transcription factor (At5g67000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201501.21e-138Integrase-type DNA-binding superfamily protein
SwissprotQ38Q401e-139EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLA0A178U9T91e-122A0A178U9T9_ARATH; Uncharacterized protein
STRINGAT5G67000.11e-138(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yang T,Poovaiah BW
    A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants.
    J. Biol. Chem., 2002. 277(47): p. 45049-58
    [PMID:12218065]
  3. Feng JX, et al.
    An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family.
    Plant Mol. Biol., 2005. 59(6): p. 853-68
    [PMID:16307362]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]