PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan000139

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 541aa MW: 58817.4 Da PI: 4.5318

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41951612	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S41951613	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S41961794	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-126205	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.8e-07	518	541	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck+G++C++ H+ Aan000139 518 GQRVCK-FYESGRCKRGASCNYWHP 541 6799.8899*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.009	516	541	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.88E-6	516	540	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	518	541	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	520	540	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
SPTQVKQEER HPGLSQDIGG AQLQKQSSEI LVQDSGNAAS WNNGSKQDVG GAQVPKSSSE 60 TQVPKSSSET QVQVAGNETS WNNNSRQDVG GAQVPKSSSE TLFQVAGNET SWNNNSREDV 120 GGSQVPKSSS ETLVQVAGNE TSWNNDSRQD VGGAQLSKTA DEWSGYSPTR VKKQEWHPEN 180 DHVAPTTANT EQTISSAPPS SQTEYNNYMP PWQGVRETIE FSTLAEESVS DLLAEVDAME 240 SQNGFPSPTS RRNNFAEDIF NGSFEEFSPT PVHGARSNGF SSNGIDIQLP FKWPEIAREN 300 ITKDIQVTIH SSEVQPPSLD MIDVNNSIKS GEGESQTKGG NVQIEEESVP MRQDNDAYET 360 SQDREGCLNE HKESECTQPT STKSEDPIAE KVRADQSDVM AVNVTLQSAK VDAVGPPPPS 420 IGSDQVYPQQ GTLNNFAQPA PEITIRADAH INPSQGVTFG WDPHQRYNNN SLRERGYNVE 480 DSGYSRNGKP WVRQSSFGSG SGSGVNGGVG YSRPPPKGQR VCKFYESGRC KRGASCNYWH 540 P

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

SPTQVKQEER HPGLSQDIGG AQLQKQSSEI LVQDSGNAAS WNNGSKQDVG GAQVPKSSSE  60
TQVPKSSSET QVQVAGNETS WNNNSRQDVG GAQVPKSSSE TLFQVAGNET SWNNNSREDV  120
GGSQVPKSSS ETLVQVAGNE TSWNNDSRQD VGGAQLSKTA DEWSGYSPTR VKKQEWHPEN  180
DHVAPTTANT EQTISSAPPS SQTEYNNYMP PWQGVRETIE FSTLAEESVS DLLAEVDAME  240
SQNGFPSPTS RRNNFAEDIF NGSFEEFSPT PVHGARSNGF SSNGIDIQLP FKWPEIAREN  300
ITKDIQVTIH SSEVQPPSLD MIDVNNSIKS GEGESQTKGG NVQIEEESVP MRQDNDAYET  360
SQDREGCLNE HKESECTQPT STKSEDPIAE KVRADQSDVM AVNVTLQSAK VDAVGPPPPS  420
IGSDQVYPQQ GTLNNFAQPA PEITIRADAH INPSQGVTFG WDPHQRYNNN SLRERGYNVE  480
DSGYSRNGKP WVRQSSFGSG SGSGVNGGVG YSRPPPKGQR VCKFYESGRC KRGASCNYWH  540
P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021982896.1	1e-94	zinc finger CCCH domain-containing protein 44-like isoform X3
TrEMBL	A0A2U1KQX1	0.0	A0A2U1KQX1_ARTAN; Zinc finger, CCCH-type

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	6e-11	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding