PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan000754
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HSF
Protein Properties Length: 353aa    MW: 38356.5 Da    PI: 5.0109
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41936408PU_unrefUnigeneView CDS
gnl|UG|Aan#S41950591PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-556160994PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.86.4e-37191102102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++f+v++++efak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
     Aan000754  19 FLTKTYQLVDDKAIDDIISWNEDGSTFIVWNPTEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCDIQ 106
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Aan000754 107 RRKI 110
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-5815108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3616108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-201942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3319108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAPPPVESDA ASRSLPTPFL TKTYQLVDDK AIDDIISWNE DGSTFIVWNP TEFAKDLLPK  60
YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCDIQRRKI TATTPAVPPA  120
TPQAVAPPAA VAVAAVASPP PRIVSPSESG EEQVISSNSS RGGGATVSLA RDTANGGTNT  180
ELAGENERLR RENVQLNKEL SQMKNLCSNI YVMMSNYATD KPSEGSSSQP SQPSQPTPTT  240
VLKPLDLLPL KRLAEECIAN SLNGDGNSNN NSNGRNGLEG TESDEMSPRL FGVPIGLKRL  300
KEGGSGEGAA TEQYSELQLQ QPGSDVKSEP LDQNGSNGSS SVDNHESTWR MRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26510815129Heat shock factor protein 1
5d5v_B2e-26510815129Heat shock factor protein 1
5d5v_D2e-26510815129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740705.11e-172heat stress transcription factor B-2a-like
RefseqXP_024970812.11e-173heat stress transcription factor B-2a-like
RefseqXP_024970820.11e-173heat stress transcription factor B-2a-like
SwissprotQ9SCW48e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2U1N3H40.0A0A2U1N3H4_ARTAN; Heat shock factor (HSF)-type, DNA-binding
TrEMBLA0A2U1Q7G10.0A0A2U1Q7G1_ARTAN; Heat shock factor (HSF)-type, DNA-binding
STRINGMigut.F00357.1.p1e-118(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-83heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]