PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan000839
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family E2F/DP
Protein Properties Length: 330aa    MW: 35913.1 Da    PI: 6.2721
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41937279PU_unrefUnigeneView CDS
gnl|UG|Aan#S41967140PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-14910PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.12.7e-2783164371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Aan000839  83 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpgngdqppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 164
                689*******...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1215330IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.3E-4677169IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-3581164IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-2184165IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.1E-2584164IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.7E-40171275No hitNo description
SMARTSM011381.2E-62171328IPR014889Transcription factor DP, C-terminal
CDDcd144588.84E-42171272IPR014889Transcription factor DP, C-terminal
PfamPF087811.0E-39172278IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MENVGGRSGN GSWGTTGSGQ STSGSGGSPS DVAMAVTPAS ENTFLRLNHL DISTGDDAGS  60
QGANNNGKKK KRAQRATGGD KGGRGLRQFS MKVCEKVESK GRTTYNEVAD ELVAEFSDPG  120
NGDQPPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWRGLPRTTI NDIEELKSER  180
LGLKSRIDKK AAYLRELEDQ HVGLQNLIKR NEELYGSGNT PSGGVALPFI LVQTRPHATV  240
EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKLGDESND VCREGGVGPS MSAMSQPQPQ  300
VPLPPPVGSS RPPPSPPLPG ILKGRVKYEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3575169193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022000883.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-142DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A251SSS80.0A0A251SSS8_HELAN; Putative winged helix-turn-helix DNA-binding domain, Transcription factor DP
STRINGXP_010241817.11e-172(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP