PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan001056

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bZIP

Protein Properties

Length: 254aa MW: 28017.3 Da PI: 6.7801

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41949747	PU_unref	Unigene	View CDS
gnl\|UG\|Aan#S41949748	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-45158	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.4	3.6e-09	88	135	4	50
XCHHHCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqk.NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 k+ +++ k NReA r++R++Kka+++ Le++v L a N++L k+++ Aan001056 88 EKNGKKRSKgNREAVRKYREKKKARTASLEDEVIRLRAMNQQLMKRVQ 135 5666666666**********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.7E-15	83	154	No hit	No description
SMART	SM00338	6.3E-9	85	153	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.2E-14	87	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.933	88	135	IPR004827	Basic-leucine zipper domain
CDD	cd14686	2.64E-13	92	144	No hit	No description
SuperFamily	SSF57959	5.13E-7	92	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDDGELEFSN HEMFLGSNVG DIPSSGSMNS FFDDIFNDAH ACTHTHTCNP PGPDSSHTHT 60 CYHVHTKILP SMSDDDKTPT DDTAESSEKN GKKRSKGNRE AVRKYREKKK ARTASLEDEV 120 IRLRAMNQQL MKRVQSQVGL EAEVGRLKCL LVDVRGRIDG ELGCFPYQKQ HPVNQSVINP 180 NLGGGFLMNP CNMQRTPSMH QDQDIDGCHL DLECMGNQGP LLNEVTGCGA NDGHVTFKPS 240 SATKKKGDRS ATSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	96	GKKRSKG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024995212.1	1e-134	basic leucine zipper 23-like
Refseq	XP_024995213.1	1e-134	basic leucine zipper 23-like
Refseq	XP_024995214.1	1e-134	basic leucine zipper 23-like
Refseq	XP_024995216.1	1e-134	basic leucine zipper 23-like
Swissprot	Q8GTS2	9e-88	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2U1KXS2	0.0	A0A2U1KXS2_ARTAN; Uncharacterized protein
STRING	XP_009797256.1	1e-109	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	4e-90	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]