PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan001081
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27330.4 Da    PI: 9.5954
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S54991912PU_refUnigeneView CDS
gnl|UG|Aan#S55122342PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-304160993PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+
  Aan001081  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 59
               79***********************************************96 PP
2K-box104.71.2e-34751741100
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                y++ + +s++++ + s++ e+akLk++ie Lq+++Rhl+GedL+sL+lkeLq+LeqqL+++lk++R +Kn+l++e+i++lqkk k++qe+n+ L+k+++e
  Aan001081  75 YAEMQLTSTHNESQGSWTLEHAKLKARIELLQKSKRHLMGEDLDSLTLKELQSLEQQLDTALKHVRLRKNQLMFESISTLQKKDKDMQERNNILSKQIKE 174
                56778889999999***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.95161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-33290IPR002100Transcription factor, MADS-box
CDDcd002652.38E-38276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-29323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-2884172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.0188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD  60
SSMDRILERY ERYSYAEMQL TSTHNESQGS WTLEHAKLKA RIELLQKSKR HLMGEDLDSL  120
TLKELQSLEQ QLDTALKHVR LRKNQLMFES ISTLQKKDKD MQERNNILSK QIKEKEKEAA  180
HHEKEPQIHA IMPSFHLGIN NCDMHQAGGD REVGEIPIQA QPSTIMPPWM VQHMNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20174173Myocyte-specific enhancer factor 2B
1tqe_Q3e-20174173Myocyte-specific enhancer factor 2B
1tqe_R3e-20174173Myocyte-specific enhancer factor 2B
1tqe_S3e-20174173Myocyte-specific enhancer factor 2B
6c9l_A3e-20174173Myocyte-specific enhancer factor 2B
6c9l_B3e-20174173Myocyte-specific enhancer factor 2B
6c9l_C3e-20174173Myocyte-specific enhancer factor 2B
6c9l_D3e-20174173Myocyte-specific enhancer factor 2B
6c9l_E3e-20174173Myocyte-specific enhancer factor 2B
6c9l_F3e-20174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.18630.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024971729.11e-128truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S71e-100AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLF4YUH41e-160F4YUH4_CHRLV; AP1-like protein
STRINGXP_009792071.11e-108(Nicotiana sylvestris)
STRINGXP_009625854.11e-107(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-89AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]