PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan001305
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 548aa    MW: 61394.9 Da    PI: 5.7078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55185659PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-60311PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-60314PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.84.9e-1181735482374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +++L+++A+a+++g +e+a+al+  l++++s +g+p+qRl ay++e+L+a+ ++s+s +yk+l++ e +    ++ ++++++++e++P++kf++  aN a
  Aan001305 173 KQTLIAIAHAIDDGLKEEATALMDALQNRVSVTGEPIQRLGAYMLEGLKAKQLSSGSLIYKKLRCYEPN---PKQLMTYMSVLYEICPYYKFAYTSANIA 269
                689*****************************************************************9...6888888999****************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I eav+ +++vH+iDf i qG QW+ L++ La+R++gpp+lR+Tgv++ +s+  +   l  +g+rLak Ae+ gvpfef++ +a + +++e  +Lrv+pg
  Aan001305 270 IKEAVQYDSHVHVIDFLIAQGSQWMQLIEDLAKRRGGPPRLRVTGVDDGDSSyaRGGGLDLVGQRLAKHAEKHGVPFEFHA-AAISGSEVEWGNLRVQPG 368
                ***********************************************9888888999************************.8999************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak......lpreseerikvErellgre 293
                EalaVn+ ++lh+++desvs++++rd++++lvksl+P++v++ eqe+++n++sF +rf eal+yy+a+f+s+++k      +pr++++ri+ E+ +++r+
  Aan001305 369 EALAVNFPYMLHHMPDESVSTTNHRDRLIRLVKSLNPNIVTLLEQESNTNTSSFSKRFEEALDYYTAMFESIDTKlpkniqMPRDDSQRISAEENCVARD 468
                ***************************************************************************77777788888************** PP

       GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vn+vace ++r+erhe l kW+ rl++aGF ++pls+++++ ++ +lr+++ + yr+ e++g+lvlgWk+rp+v++SaWr
  Aan001305 469 MVNIVACEDTDRVERHEPLDKWKFRLQAAGFISLPLSYSVVTGVQEVLREFS-ECYRLWEKDGALVLGWKNRPMVTCSAWR 548
                ****************************************************.77*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.038146529IPR005202Transcription factor GRAS
PfamPF035141.7E-115173548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQTSQQSRSS GAAIHRLYHQ PDHIEPFSLT GSHFQILNNN GYPNTVTVTT SNQDASVGSV  60
QTFNEQFFTL ESSPAVEYPV YNSPFGGSVS SNSRSPFSPQ ESSQSCLSNL HHSPDKSYGS  120
PFSNEVEQAL KEVEMELLGP TSDFEDGSIT SSFDNVNKYH KMLQMGISNL DVKQTLIAIA  180
HAIDDGLKEE ATALMDALQN RVSVTGEPIQ RLGAYMLEGL KAKQLSSGSL IYKKLRCYEP  240
NPKQLMTYMS VLYEICPYYK FAYTSANIAI KEAVQYDSHV HVIDFLIAQG SQWMQLIEDL  300
AKRRGGPPRL RVTGVDDGDS SYARGGGLDL VGQRLAKHAE KHGVPFEFHA AAISGSEVEW  360
GNLRVQPGEA LAVNFPYMLH HMPDESVSTT NHRDRLIRLV KSLNPNIVTL LEQESNTNTS  420
SFSKRFEEAL DYYTAMFESI DTKLPKNIQM PRDDSQRISA EENCVARDMV NIVACEDTDR  480
VERHEPLDKW KFRLQAAGFI SLPLSYSVVT GVQEVLREFS ECYRLWEKDG ALVLGWKNRP  540
MVTCSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-491725484375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.59300.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}.
UniprotTISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022025201.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2U1MZ960.0A0A2U1MZ96_ARTAN; GRAS protein
STRINGXP_009773976.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-178SCARECROW-like 13