PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan001332
Common NameDELLA
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 533aa    MW: 58629.4 Da    PI: 4.7322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55061280PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-36041PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.31.4e-1341635281374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++l+la++l+++   la +++ +m+++a+yf+eALa+r++         l+p+++     + +   ++ f+e++P++kf+h+taNq
  Aan001332 163 LVHTLMACAEAVQQKNLNLAETLVKQAGVLAVSQAGAMRKVATYFAEALARRIYA--------LTPKDS----IAFNDVLQSHFYETCPYIKFAHFTANQ 250
                689***************************************************9........444444....3333334446***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp++R+Tg+g+p+ ++k+ l+e+g++La++Ae+++v+fe++ ++a++l+d+e+ +L++++gE
  Aan001332 251 AILEAFSGAKKVHVIDFSMKQGMQWPALMQALALRPGGPPTFRLTGIGPPSGDEKDHLQEVGWKLAQLAETIQVEFEYRGFLAESLADIEPGMLDIREGE 350
                ***************************************************9************************************************ PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.......lpreseerikvErellgre 293
                 laVn+ +++h+ll++ +s+e+    vL +vk+++P ++++ve+ea+hn++ Fl+rf+eal+yys+lfdsle++       +   s++++ +++++lg++
  Aan001332 351 LLAVNSCFEMHQLLARAGSVEK----VLTAVKDMKPVIFTLVEEEANHNGPVFLDRFTEALHYYSTLFDSLESSgnngngeVDGVSNQDKIMSEVYLGKQ 446
                ****************999999....*********************************************998677777766667************** PP

       GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                i+nvvaceg +r+erh t ++W+ r+e++GF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Aan001332 447 ICNVVACEGVDRVERHMTSGQWKTRFENSGFEPVNLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLITTSAWK 528
                *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.0E-2945109IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.4E-3245116No hitNo description
PROSITE profilePS5098564.567137507IPR005202Transcription factor GRAS
PfamPF035144.8E-132163528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
HTNMKRHYPN MLNDIGCSSS SSKPKMLWDG CDGDGDVDDQ DAGVDELLAV LGYKVKPSDM  60
ADVAQKIEHL EGVFQNDDGL TQLASDSVHY NPSNLSTWLE SMITELDPTL SNDLQSIPGN  120
AIYPPSKKLK NLDPGQVQPD PVLEPGRVSP VVLIDTQENG VRLVHTLMAC AEAVQQKNLN  180
LAETLVKQAG VLAVSQAGAM RKVATYFAEA LARRIYALTP KDSIAFNDVL QSHFYETCPY  240
IKFAHFTANQ AILEAFSGAK KVHVIDFSMK QGMQWPALMQ ALALRPGGPP TFRLTGIGPP  300
SGDEKDHLQE VGWKLAQLAE TIQVEFEYRG FLAESLADIE PGMLDIREGE LLAVNSCFEM  360
HQLLARAGSV EKVLTAVKDM KPVIFTLVEE EANHNGPVFL DRFTEALHYY STLFDSLESS  420
GNNGNGEVDG VSNQDKIMSE VYLGKQICNV VACEGVDRVE RHMTSGQWKT RFENSGFEPV  480
NLGSNAYKQA SMLLALFAGG DGYRVEENNG CLMLGWHTRP LITTSAWKLR CID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6515853013380Protein SCARECROW
5b3h_D2e-6515853013380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733606.10.0DELLA protein GAI1-like
RefseqXP_024991514.10.0DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLD2WS930.0D2WS93_ARTAN; Putative DELLA protein
STRINGVIT_01s0011g05260.t010.0(Vitis vinifera)
STRINGXP_009603475.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Graham IA, et al.
    The genetic map of Artemisia annua L. identifies loci affecting yield of the antimalarial drug artemisinin.
    Science, 2010. 327(5963): p. 328-31
    [PMID:20075252]