PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan001520
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family CO-like
Protein Properties Length: 460aa    MW: 52384.7 Da    PI: 6.1828
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41945439PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-139543PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-139544PU_refplantGDBView CDS
PUT-183a-Artemisia_annua-139545PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.33.7e-091861340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C+++ +k+++++C  ++ +lC++C  + H+       H++v
  Aan001520 18 ARACDNCIRKRARWYCAADDAFLCQSCDGSVHSAnplarrHERV 61
               578*****************************657888888876 PP
2CCT67.92.7e-23407450144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Aan001520 407 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 450
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8221663IPR000315B-box-type zinc finger
SMARTSM003361.0E-101663IPR000315B-box-type zinc finger
PfamPF006431.1E-71861IPR000315B-box-type zinc finger
CDDcd000218.36E-81963No hitNo description
PfamPF062037.9E-18407449IPR010402CCT domain
PROSITE profilePS5101716.083407449IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MVSSSDKKLA NVVGGKTARA CDNCIRKRAR WYCAADDAFL CQSCDGSVHS ANPLARRHER  60
VRLKVASLKL SSLDKPSPPP WHHGFTKKPR TPRGGNHHKQ ASKQTPKSEE SSITFNPLHL  120
VPEIGCDEAR NVTTEEQLLY QVPVFDPFAA ELCLSGNSNE VATPVKQTEV TTPTDHADHN  180
HDDHDHYHDH DHEDHQHGSK VTFDLNSLNG LMLPSDMELA EFAADVESLL GKGLDDESFA  240
IDGLGLMNCH EKDSCGSLEK VKVEQDNDQC EIVECEMEMM REPFQLSFDY DSPLWEEKDE  300
KIVVDGDDHM CMVKVDQDDH VDIDHIEKYD DDEKKKNKRI LKLDYERIIA AWDDQRSPWT  360
TGDRPEFDLD DCWPMCMGGC GIMHHHHHPY GDTGMISGNP AMLDGGREAR VSRYREKRRT  420
RLFSKKIRYE VRKLNAEKRP RMKGRFVKRA SSLGFPLLSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417433RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.194120.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756065.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2U1PJ260.0A0A2U1PJ26_ARTAN; CCT domain-containing protein
STRINGVIT_01s0011g03520.t011e-165(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-96B-box type zinc finger protein with CCT domain