PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan001787
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family G2-like
Protein Properties Length: 402aa    MW: 44644.6 Da    PI: 7.3113
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41937816PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-101408PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.55.5e-27136190156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k +++Wtp+LH+rFv+aveqL G +kA+P++ile+m++ +Lt+++++SHLQkYR++
  Aan001787 136 KVKVDWTPDLHRRFVQAVEQL-GVDKAVPSRILEIMGIGCLTRHNIASHLQKYRSH 190
                5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.075133192IPR017930Myb domain
SuperFamilySSF466891.4E-17134193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-26134193IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-26136190IPR006447Myb domain, plants
PfamPF002494.0E-7139188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLAVVSPLDN NTGRDGRDNH QGGDMVGFDD FPDFSDDNLL ESIDFDDLFV GMDDDDDRDM  60
LPALEMDPEL FSFSSGREED SSDNNNINNS SNNNNNCVTS LSRVEEDFKS RKEDVVSRSP  120
NPKKSSSKNS SQGKRKVKVD WTPDLHRRFV QAVEQLGVDK AVPSRILEIM GIGCLTRHNI  180
ASHLQKYRSH RKHLLAREAE AASWSQRRQI YGRSTSSAGG NVGGCKRDMR PWVAPPTMGF  240
PPVTPVPHYR PLHVWGHPSM DRPLMPVWPK HMAHSPPPTH AWPPSPSPPP TWLPHHQRAP  300
CFPQMLPQTK YPAPHGQVPG IPPPHAMYKI DPVIGVTPHI GQSCPQPPLD LHPSKESIDA  360
AIGDILSKPW QPLPLGLKPP ALDSVMVQLK RQGIPKIPPA CV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-14133188257ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette and cauline leaves. Expressed at low levels in cotyledons and shoots. {ECO:0000269|PubMed:12220263}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024988486.10.0transcription activator GLK1
SwissprotQ9SIV33e-91GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A2U1QKZ10.0A0A2U1QKZ1_ARTAN; GBF's pro-rich region-interacting factor 1
STRINGGLYMA13G37010.11e-135(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-74GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]