PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan001793
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 401aa    MW: 44503.9 Da    PI: 7.2036
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41946673PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-159878PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.32e-113257227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C+++ rtG C++G++C+F+H+p
  Aan001793 32 GEPDCSYYIRTGLCRFGATCRFNHPP 57
               6899********************97 PP
2zf-CCCH38.51.9e-1276102127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C ++++tGtCk+G++CkF+H++
  Aan001793  76 PGQPECEYYLKTGTCKFGPTCKFHHPR 102
                5789*********************96 PP
3zf-CCCH352.5e-11124148327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +f rtG+Ck+G++CkF+H++
  Aan001793 124 EPECAYFIRTGQCKFGNTCKFHHPQ 148
                799********************97 PP
4zf-CCCH37.93e-12276302127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+f+++tG Ck+G+ C+F+H++
  Aan001793 276 PGQPDCQFYMKTGDCKFGAVCRFHHPR 302
                5789*********************96 PP
5zf-CCCH40.35.2e-13322348127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f++r+G+Ck+G++CkF H++
  Aan001793 322 PGEPLCIFYSRYGICKFGPSCKFDHPM 348
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2393058IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-53057IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-83257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-43656IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.00475103IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-675102IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-1077102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-679103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-581102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244121149IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4121148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6124149IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8124148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4127147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69275303IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6275302IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5280304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4281303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709321349IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7321348IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSSQPLDEDA LWQLNLRSRE PMESGLYPVR EGEPDCSYYI RTGLCRFGAT CRFNHPPNRK  60
LAIATAKMRG EYPERPGQPE CEYYLKTGTC KFGPTCKFHH PRDMAGIAGR VSLNVLGYPL  120
RPNEPECAYF IRTGQCKFGN TCKFHHPQPS NMMVAFSGSS VYPTVQSPTS PGQQSYPGVT  180
TNWSLPSASY VPSPHWQAPS NYAQMILPQG VVSVPGWSAY RGSMGSLSSL ENQQQAAGNN  240
QIYGTSRQYE TDNGTVAGTY SSYYALPTEN VFPERPGQPD CQFYMKTGDC KFGAVCRFHH  300
PRERVIPMPD CDLSPIGLPL RPGEPLCIFY SRYGICKFGP SCKFDHPMGV FTYNYASSSA  360
DDHLLASSSG THPLNVTSEV PLTISEIRQR PSSDNNTDPE E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.34210.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022015226.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2U1PX010.0A0A2U1PX01_ARTAN; Zinc finger protein 1
STRINGXP_004302155.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-168zinc finger protein 1