PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan001882

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 389aa MW: 42233.9 Da PI: 6.2557

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S54992098	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-1322	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	1	21	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg Aan001882 1 PCPDFRK-GTCRRGDMCEYAHG 21 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0058	1	22	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	1	23	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.286	1	23	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.6E-6	1	21	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-5	29	59	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	30	31	54	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
PCPDFRKGTC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTQEELRPL 60 FVSTGSAVPS PRSTASGPTA LDFAAAMSMM PGAGPGGISS FTPPMSPSGN GMSSMNWAQP 120 NVPSLHLPGS SLQSSRLRSS LNARDMPSDQ ELNLQLLNEL SRQQRSILTP TKLDDIFAAE 180 SSSPRFSDQS VFSPRHNASV FNQFQQQQSM LSPINTNFSP KSGPFSVQSP GRMSPRSVDP 240 ISPMSSRVSM LARENQQQFR SLSSRELGSR SGSIMGGSGE GVDPWSQWGP GNEKADWGVN 300 PDEFGKLRRS SSFEMNGGNN GEEPDLSWVQ SLVKETPHEM KEKVGAYGGG SSSVGDVGGE 360 GPNTQIEQVD QSALSAWIEQ MQLDQLVAQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

PCPDFRKGTC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTQEELRPL  60
FVSTGSAVPS PRSTASGPTA LDFAAAMSMM PGAGPGGISS FTPPMSPSGN GMSSMNWAQP  120
NVPSLHLPGS SLQSSRLRSS LNARDMPSDQ ELNLQLLNEL SRQQRSILTP TKLDDIFAAE  180
SSSPRFSDQS VFSPRHNASV FNQFQQQQSM LSPINTNFSP KSGPFSVQSP GRMSPRSVDP  240
ISPMSSRVSM LARENQQQFR SLSSRELGSR SGSIMGGSGE GVDPWSQWGP GNEKADWGVN  300
PDEFGKLRRS SSFEMNGGNN GEEPDLSWVQ SLVKETPHEM KEKVGAYGGG SSSVGDVGGE  360
GPNTQIEQVD QSALSAWIEQ MQLDQLVAQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.4034	0.0	leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024967874.1	0.0	zinc finger CCCH domain-containing protein 30-like
Refseq	XP_024967875.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	1e-138	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2U1MB34	0.0	A0A2U1MB34_ARTAN; Ankyrin repeat-containing protein
STRING	EOY09323	1e-177	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-102	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]