PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan001947

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 381aa MW: 41857.6 Da PI: 8.2596

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55093742	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-39446	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.9e-11	14	39	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Aan001947 14 GEPDCSYYIRTGLCRFGATCRFNHPP 39 6899********************97 PP
2	zf-CCCH	32.1	2e-10	65	85	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ Aan001947 65 QYYLKTGTCKFGATCKFHHPR 85 59*****************96 PP
3	zf-CCCH	28.3	3.1e-09	108	130	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C + +++G+Ck G++CkF+H+ Aan001947 108 AECAYLSENGQCKLGSTCKFHHP 130 79********************9 PP
4	zf-CCCH	38.1	2.5e-12	262	288	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Aan001947 262 PGQPECQFYMKTGDCKFGAVCRFHHPR 288 5789*********************96 PP
5	zf-CCCH	40.4	4.9e-13	308	334	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Aan001947 308 PGEPLCIFYSRYGICKFGPSCKFDHPM 334 589**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-5	12	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.239	12	40	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-8	14	39	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	17	40	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.0E-4	18	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.498	57	86	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.46	60	85	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.33E-5	65	87	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-8	65	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	66	85	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.934	104	132	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0062	104	131	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.94E-5	105	131	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-7	107	130	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.596	261	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.8E-6	261	288	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-9	263	288	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.94E-6	265	291	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-5	267	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-7	307	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.709	307	335	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-10	309	334	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	310	334	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	312	332	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MEVMEAGPYP VREGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATAKM RGEYPERAGQ 60 PXMVQYYLKT GTCKFGATCK FHHPRDKAGI AGRVSLNVLG YPLRTNEAEC AYLSENGQCK 120 LGSTCKFHHP XTVEYDGLIS GSPAYPTVQS PTSPGQQSYP GGITNWSLSR ASFISPRWQA 180 PSNYAPMILP QGVVSVPGWS AYGGQLGSIS SSESQQQTGG NSQIYGTSRQ SDGNNEALQG 240 TYPSYRTGYY AMPSENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER MIPVPDCVLS 300 PMGLPLRPGE PLCIFYSRYG ICKFGPSCKF DHPMGVFAYN FSPSTSADAS NVRRLIGSSS 360 TNMSPERRQI PTSDDNIDTE G

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MEVMEAGPYP VREGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATAKM RGEYPERAGQ  60
PXMVQYYLKT GTCKFGATCK FHHPRDKAGI AGRVSLNVLG YPLRTNEAEC AYLSENGQCK  120
LGSTCKFHHP XTVEYDGLIS GSPAYPTVQS PTSPGQQSYP GGITNWSLSR ASFISPRWQA  180
PSNYAPMILP QGVVSVPGWS AYGGQLGSIS SSESQQQTGG NSQIYGTSRQ SDGNNEALQG  240
TYPSYRTGYY AMPSENVFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER MIPVPDCVLS  300
PMGLPLRPGE PLCIFYSRYG ICKFGPSCKF DHPMGVFAYN FSPSTSADAS NVRRLIGSSS  360
TNMSPERRQI PTSDDNIDTE G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022025965.1	0.0	zinc finger CCCH domain-containing protein ZFN-like
Swissprot	Q9SWF9	0.0	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A2U1PUU3	0.0	A0A2U1PUU3_ARTAN; Zinc finger CCCH domain-containing protein
STRING	VIT_04s0023g00370.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-157	zinc finger protein 1