PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan002061

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 369aa MW: 40808.5 Da PI: 6.1848

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55099338	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-40803	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.5e-07	129	149	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd+C +aHg Aan002061 129 ACPEFRK-GGCKKGDSCEYAHG 149 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	4.3E-5	121	151	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-5	124	150	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.263	124	151	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-5	129	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.798	159	183	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	33	159	182	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAGDTNNHHG MMVHVPPWTT LMDDPLTGLS PFSPHSPNAA TTLEDYAYFL RNDAALRRYL 60 EEDLDSENGC TDFDITSEAY ACDSFRMYEF KVRKCQRARS HDWTDCPYAH PGEKARRRDP 120 RKYNYSGTAC PEFRKGGCKK GDSCEYAHGV FECWLHPSRY RTQPCKDGVG CRRRVCFFAH 180 TPEQLRVLSP GNDNGPGSGR SFSSFFSSPS ETSGATDQEI FDSPPMSPMM DGCLSRSVGS 240 VSVNEMVSSL RRLQLNKTPT MSTSWSMQMS RVGAGLVSSP RAGSGSGFYS LPSTPTRPVT 300 LPGLGFPEIW EEGGAEEEPV MERVESGRVL RAKMFEKLSK ENHVDAVDPN SGDGSGSNPD 360 VGWISELVK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAGDTNNHHG MMVHVPPWTT LMDDPLTGLS PFSPHSPNAA TTLEDYAYFL RNDAALRRYL  60
EEDLDSENGC TDFDITSEAY ACDSFRMYEF KVRKCQRARS HDWTDCPYAH PGEKARRRDP  120
RKYNYSGTAC PEFRKGGCKK GDSCEYAHGV FECWLHPSRY RTQPCKDGVG CRRRVCFFAH  180
TPEQLRVLSP GNDNGPGSGR SFSSFFSSPS ETSGATDQEI FDSPPMSPMM DGCLSRSVGS  240
VSVNEMVSSL RRLQLNKTPT MSTSWSMQMS RVGAGLVSSP RAGSGSGFYS LPSTPTRPVT  300
LPGLGFPEIW EEGGAEEEPV MERVESGRVL RAKMFEKLSK ENHVDAVDPN SGDGSGSNPD  360
VGWISELVK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.12238	0.0	trichome

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021969805.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	1e-110	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A2U1KE14	0.0	A0A2U1KE14_ARTAN; Zinc finger, CCCH-type
STRING	XP_009791791.1	1e-130	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-100	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]