PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan002327
Common NameMIXTA
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 344aa    MW: 39061.6 Da    PI: 4.6666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55061279PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-120554PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-141561248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g+WT++Ed++l++ +   G  +W+++++  g+ R++k+c++rw +yl
        Aan002327 15 GPWTADEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     89*****************************99************97 PP
2Myb_DNA-binding52.21.5e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
        Aan002327  71 SENEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      789***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-19563IPR009057Homeodomain-like
PROSITE profilePS5129411.516961IPR017930Myb domain
SuperFamilySSF466893.48E-2611108IPR009057Homeodomain-like
SMARTSM007174.4E-111363IPR001005SANT/Myb domain
PfamPF002492.1E-131561IPR001005SANT/Myb domain
CDDcd001671.68E-81661No hitNo description
PROSITE profilePS5129426.04562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-2564117IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002492.2E-1470111IPR001005SANT/Myb domain
CDDcd001674.52E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRQPCCDKV GLKQGPWTAD EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SENEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHKPLP PPTPLTNCQS SPLPSVEPQV HEPPHNKNTP LNEHMKHQNN DISEAVNETM  180
SNQSSTISEV TKDELEDSEE SNRIEETPQV VDFCTDEVPL IEPHKILLPA DINILPPLSS  240
SSSSSSTSST YDISTCNQNF INEDLYQLSP SFDWCSTSLN STNYNNFEDG LWDDDEFISN  300
LGMLINDEFE TDTTIQNDTT FAPDFTQYSR MLIDDDSWKF NGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756230.10.0transcription factor MYB20-like
TrEMBLD2WS940.0D2WS94_ARTAN; Putative MYB-related transcription factor
STRINGPOPTR_0017s02850.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.17e-85myb domain protein 20
Publications ? help Back to Top
  1. Graham IA, et al.
    The genetic map of Artemisia annua L. identifies loci affecting yield of the antimalarial drug artemisinin.
    Science, 2010. 327(5963): p. 328-31
    [PMID:20075252]