PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan002368

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

ZF-HD

Protein Properties

Length: 342aa MW: 37536.5 Da PI: 8.1539

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41930565	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-154688	PU_ref	plantGDB	View CDS
PUT-183a-Artemisia_annua-82981	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.7	1e-31	63	118	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 v YkeClkNhAa++Gghav GCgEfmps++++ + +++lkCaACgCHRnFHRre+ Aan002368 63 VVSYKECLKNHAATMGGHAVHGCGEFMPSPSSSpSLPTSLKCAACGCHRNFHRREH 118 589*************************999999****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-18	44	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.4E-26	64	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-28	66	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.942	66	117	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.9E-20	207	260	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-9	207	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.7E-21	209	255	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEISPPPPPP STTITTTAAT TVKTPDPESE PPKQPIPPPF TNGVLKRHKP FNHHHQPLAP 60 PVVVSYKECL KNHAATMGGH AVHGCGEFMP SPSSSPSLPT SLKCAACGCH RNFHRREHYH 120 FQPPSPPPMP HLLEYQPHNR HEPPPPPPQP PITTTTSPLN SPSSPPPISS SYYPSAAPHM 180 LLALGSETNH YSTTPMRAKT DLEHSSXQAQ KDKMHEVASK VGWKMQKRDE EMINSFCNEI 240 GVDRNVFKVW MHNNKSTNKN NENLGHGHAS SNNNNIINVN NINGHDAIDF IMSRNINNNN 300 NNNVSSSHNN DVINGSNNIN NNNNHDLHLV SGNVIKGSSS SC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEISPPPPPP STTITTTAAT TVKTPDPESE PPKQPIPPPF TNGVLKRHKP FNHHHQPLAP  60
PVVVSYKECL KNHAATMGGH AVHGCGEFMP SPSSSPSLPT SLKCAACGCH RNFHRREHYH  120
FQPPSPPPMP HLLEYQPHNR HEPPPPPPQP PITTTTSPLN SPSSPPPISS SYYPSAAPHM  180
LLALGSETNH YSTTPMRAKT DLEHSSXQAQ KDKMHEVASK VGWKMQKRDE EMINSFCNEI  240
GVDRNVFKVW MHNNKSTNKN NENLGHGHAS SNNNNIINVN NINGHDAIDF IMSRNINNNN  300
NNNVSSSHNN DVINGSNNIN NNNNHDLHLV SGNVIKGSSS SC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022011404.1	3e-83	zinc-finger homeodomain protein 10-like
TrEMBL	A0A251S6Y7	6e-82	A0A251S6Y7_HELAN; Putative ZF-HD homeobox protein, Cys/His-rich dimerization domain-containing protein
STRING	XP_010693250.1	4e-66	(Beta vulgaris)
STRING	XP_009787877.1	3e-66	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	2e-40	homeobox protein 30