PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan002817
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 308aa    MW: 35388.6 Da    PI: 8.8086
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41932203PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-154956PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-154957PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.5e-91530575373
       GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                +e+l+a +++  ++P+ k++ + aN+ I+ea+  ++++Hi+Df+i++G+QWp L++ La+Rp+gpp+lRiTg++ p++g   +e +eetg+rLa+++++ 
  Aan002817   5 AEKLKACQVYLSACPFEKIGIFFANKVIYEAALASTTLHIVDFGIEYGFQWPVLIRHLAERPGGPPKLRITGIELPKPGfrPAEGVEETGRRLANYCAKY 104
                68999*************************************************************************9*9******************* PP

       GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                +vpfe+n+++++++e++++e+L+++++E+laV+   + ++llde+v ++s+rd vLkl+++++P+++v +  + +++s+ F++rf eal ++s++fd++e
  Aan002817 105 NVPFEYNAIATQNWETVKVEDLKLQRNECLAVHTRTRFKNLLDETVVVDSPRDVVLKLIRDMKPDIFVPTIVNGSYSSPFFVTRFKEALFHFSSMFDMVE 204
                *********999**************************************************************************************** PP

       GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                a+l r++e+r + E+e+ gre++nv+acega+r+er et+++W+ rl +aGFk  pl+ +++++ ++ ++  + + +  +e+ +++++gWk+r L + S+
  Aan002817 205 ATLDRDDEHRLNFEKEFCGREAMNVIACEGAQRVERPETYKQWQVRLIRAGFKYKPLNRDVVSKLRAKVKAGYHKDFVFDEDGKWVLQGWKGRILHASSC 304
                **********************************************************************999888************************ PP

       GRAS 373 W 373
                W
  Aan002817 305 W 305
                * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.51286IPR005202Transcription factor GRAS
PfamPF035142.6E-885305IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
XISAAEKLKA CQVYLSACPF EKIGIFFANK VIYEAALAST TLHIVDFGIE YGFQWPVLIR  60
HLAERPGGPP KLRITGIELP KPGFRPAEGV EETGRRLANY CAKYNVPFEY NAIATQNWET  120
VKVEDLKLQR NECLAVHTRT RFKNLLDETV VVDSPRDVVL KLIRDMKPDI FVPTIVNGSY  180
SSPFFVTRFK EALFHFSSMF DMVEATLDRD DEHRLNFEKE FCGREAMNVI ACEGAQRVER  240
PETYKQWQVR LIRAGFKYKP LNRDVVSKLR AKVKAGYHKD FVFDEDGKWV LQGWKGRILH  300
ASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-34830796380Protein SCARECROW
5b3h_A8e-34830795379Protein SCARECROW
5b3h_D8e-34830795379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973552.10.0scarecrow-like protein 14
RefseqXP_024973553.10.0scarecrow-like protein 14
SwissprotQ9XE581e-142SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2U1LHX80.0A0A2U1LHX8_ARTAN; GRAS protein
STRINGXP_009764837.11e-166(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-144SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]