PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan002955
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HD-ZIP
Protein Properties Length: 298aa    MW: 34217.7 Da    PI: 4.4711
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41968458PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-66624PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1959112356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++++q++ Le+ Fe +++++ +++ + A++lgL+ rqV +WFqNrRa++k
  Aan002955  59 KKRRLSNHQVKSLEKIFEVDNKLDPDRKVKVAHELGLQPRQVAIWFQNRRARWK 112
                45689************************************************9 PP
2HD-ZIP_I/II122.71.8e-3959149292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrls++qvk+LE+ Fe ++kL+p+rKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk++yd lk + ++Le e+e++ +el 
    Aan002955  59 KKRRLSNHQVKSLEKIFEVDNKLDPDRKVKVAHELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKSSYDGLKINYQKLELEKETILKELV 149
                  9**********************************************************************************99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1947116IPR009057Homeodomain-like
PROSITE profilePS5007116.77954114IPR001356Homeobox domain
SMARTSM003895.2E-1957118IPR001356Homeobox domain
CDDcd000861.72E-1759115No hitNo description
PfamPF000461.8E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1961121IPR009057Homeodomain-like
PRINTSPR000316.7E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000316.7E-594110IPR000047Helix-turn-helix motif
PfamPF021836.5E-13114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKRNFNCSDS LTHFLSHPLE VEMKSEEDYG GEFQPMVDGG ATADGEDYGG EETGQFGDKK  60
RRLSNHQVKS LEKIFEVDNK LDPDRKVKVA HELGLQPRQV AIWFQNRRAR WKTKQLERDY  120
NVLKSSYDGL KINYQKLELE KETILKELVE LKAKLHEDTT ERNDEIEDRE NNTLFLGSDP  180
TNTNNEVYTS LNYDKTQKLL DLKDGFSDSD SSGVLNEENM NVSNANESPL LNMTSFGLSS  240
LCSSSVTTSN HTDMIDPGTY QQQQQDPYLV SNVEEESCNI FLVDQAPNLC WYFRDHMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769750.11e-166homeobox-leucine zipper protein ATHB-16-like
TrEMBLA0A2U1M9U90.0A0A2U1M9U9_ARTAN; HD-ZIP protein
STRINGPGSC0003DMT4000792304e-63(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.12e-39homeobox protein 5