PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003209
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HD-ZIP
Protein Properties Length: 279aa    MW: 32047.8 Da    PI: 4.4075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41936648PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-115836PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-2066119356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++++eq++ Le+ Fe+++++  e+++eLAkklgL+ rqV vWFqNrRa++k
  Aan003209  66 KKRRLSPEQVHMLERSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 119
                56689************************************************9 PP
2HD-ZIP_I/II133.29.4e-4365155191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrls eqv++LE+sFeee+kLeperK+ela++LglqprqvavWFqnrRAR+ktk lE+dy++Lk++yd l+++ +++ ke+e+L++e+
    Aan003209  65 EKKRRLSPEQVHMLERSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKTLERDYDRLKSSYDILTSDFDSIVKENEKLKAEV 155
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2055121IPR009057Homeodomain-like
PROSITE profilePS5007118.23661121IPR001356Homeobox domain
SMARTSM003894.5E-2064125IPR001356Homeobox domain
PfamPF000466.6E-1866119IPR001356Homeobox domain
CDDcd000861.19E-1966121No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2167128IPR009057Homeodomain-like
PRINTSPR000311.4E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000311.4E-6101117IPR000047Helix-turn-helix motif
PfamPF021838.6E-17121163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESGHLFFGC NNSNNTNMMF LGNGDNHFRG TRLGFNMEES SKKRPFFSSL DDMLEEEYYD  60
EQLTEKKRRL SPEQVHMLER SFEEENKLEP ERKTELAKKL GLQPRQVAVW FQNRRARWKT  120
KTLERDYDRL KSSYDILTSD FDSIVKENEK LKAEVLSLTE KLQPKEVHEN SGTGQDSAAD  180
ANEGGDVLAP QENVKLEDHF STGSGGSAVV DDLDGPQLVD SGDSYFPDED YPHEYVAPVD  240
QSEEDDGSDD GHNHFPYMFA TADHHHHEES DSLGWWVWS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.21470.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765577.11e-158homeobox-leucine zipper protein HAT5
SwissprotQ022832e-85HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2U1NJK10.0A0A2U1NJK1_ARTAN; HD-ZIP protein
STRINGEOY023591e-118(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-86homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]