PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003433
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ZF-HD
Protein Properties Length: 263aa    MW: 30228.9 Da    PI: 7.922
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41954589PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-62160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.2e-3383139360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                   vrYkeC+kNhAas+G+h++DGCgEfmp+ geegt+++lkCaAC+CHR+FHRre e e
    Aan003433  83 VVRYKECQKNHAASMGSHVLDGCGEFMPN-GEEGTPESLKCAACECHRSFHRREAEGE 139
                  589*************************8.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2179139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-3084136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-3085135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.27686135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.49E-20185259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-30187260IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-25198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MELRENNLPQ SNQVSSSLYT YAPINSPNII PDQPHLHQRN QYHGLQQEPI SIPIPDSDPA  60
EPLASQTPVQ RTPLDNVAVA PVVVRYKECQ KNHAASMGSH VLDGCGEFMP NGEEGTPESL  120
KCAACECHRS FHRREAEGES QSSTWVHTTH YPQPPRAATV QPPLQQHHHH HRYNQVPPMM  180
MAFGGTSSSE EHEHQPSRKR FRTKFTEQQK ERMHEFAERI GWKIQKQDDQ AIMQFCNEVG  240
LKRKVFKVWM HNCKQASKKK QHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211992571876ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024978564.11e-103zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW72e-57ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2U1N9510.0A0A2U1N951_ARTAN; Homeodomain-containing protein
STRINGXP_009603276.13e-72(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-58homeobox protein 24