PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003610
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 249aa    MW: 28439.1 Da    PI: 8.4814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41948828PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008194115323
                ETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                C+ C+++++++ +L  H +  H
  Aan003610  94 CSVCSRVYPTSRLLSIHVSEvH 115
                99***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.996590IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806790IPR007087Zinc finger, C2H2
SMARTSM00355592115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SMARTSM003551130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVDNNLQTQT QFKHLFPVIR RFSPDDPFFA SGNIERELLA KQVALDITED EKQQLAYMED  60
ESSDVFCPIV GCGAHLRSLA EFEDHYNARH TACCSVCSRV YPTSRLLSIH VSEVHDSFFQ  120
AKVARGYPMY ECLVEGCGEK LKSYKSRHQH LIDKHSFPSS FEFYKKTRPS KKDRVKKNQR  180
KQHQTTLTRD DEDGSSAMQI EEETLNGLVS AVSKLKTSED STPSAISFGR RHTRGVTFVP  240
RAVQRATKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164175KKTRPSKKDRVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022005572.11e-151zinc finger protein 511
TrEMBLA0A2U1NBY20.0A0A2U1NBY2_ARTAN; Zinc ion binding protein
STRINGXP_006470078.11e-120(Citrus sinensis)
STRINGXP_008362107.11e-120(Malus domestica)
STRINGXP_006447049.11e-120(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-107zinc ion binding;nucleic acid binding;zinc ion binding