PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003700
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family B3
Protein Properties Length: 243aa    MW: 27343.9 Da    PI: 5.624
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-105277PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15133231398
                EE-...-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
         B3   3 kvl.tpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                kv  t+ ++lk++r+++p+++a++h     g   e + l + d++g++W v+++ + + ++  yv+t G k+F  +++L++gD+v F++  r ++++ v+
  Aan003700 133 KVVsTTDSNLKTSRMRIPRNYATAHfpevTGT--EVVPLNIIDTDGKEWGVYFRCWPHYNKatYVMT-GLKDFYVSKNLQAGDTVAFYR--RdTDGKIVM 227
                544267788999*************9865333..45569999***********88777776657777.********************4..338888887 PP

                EEE- CS
         B3  95 kvfr 98 
                 +++
  Aan003700 228 ELRK 231
                7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-17128231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-19128236IPR015300DNA-binding pseudobarrel domain
CDDcd100177.47E-19129231No hitNo description
SMARTSM010196.1E-12131233IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87132233IPR003340B3 DNA binding domain
PfamPF023627.4E-13135230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGDSLKIKPC FNCKDSSSVK LMNGWKDSTG EYVPLCYNCC SIYKAGQFCE MFHSDEDGWR  60
DCESCKQLIH CGCIVSLSDY MMHDSGGITC NKCSDTNSLL GRDCSNDESH STDVTDLTND  120
TDLKSVLTPL FEKVVSTTDS NLKTSRMRIP RNYATAHFPE VTGTEVVPLN IIDTDGKEWG  180
VYFRCWPHYN KATYVMTGLK DFYVSKNLQA GDTVAFYRRD TDGKIVMELR KPSDQGPVWP  240
CAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-241132368128B3 domain-containing transcription repressor VAL1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2U1QFE10.0A0A2U1QFE1_ARTAN; B3 domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.13e-25VP1/ABI3-like 3