PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003738
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 238aa    MW: 27498.3 Da    PI: 10.0911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41932960PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-0693115123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Aan003738  93 FVCEICNKGFQRDQNLQLHRRGH 115
                89*******************88 PP
2zf-C2H2140.00014170192123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H +t+
  Aan003738 170 WKCEKCSKKYAVQSDWKAHSKTC 192
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.09E-892115No hitNo description
Gene3DG3DSA:3.30.160.606.4E-692115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.1E-593115IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01793115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94993115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355120135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-5158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.09E-8165190No hitNo description
SMARTSM00355140170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAXPSLKIRA KDKRIEDEQE RDMMSGEMFP IPLQDHHHHH QQQQHHQLPT HEPNPSPKPI  60
SNLKKKRNLP GTPDPEAEVM ALSPKSLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRNKQDPI KKKVYICPEV SCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA  180
VQSDWKAHSK TCGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESVRLGT PNSLGLKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-38166230367Zinc finger protein JACKDAW
5b3h_F6e-38166230367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021973189.11e-140zinc finger protein JACKDAW isoform X1
RefseqXP_021973190.11e-140zinc finger protein JACKDAW isoform X2
SwissprotQ9SCQ61e-109IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2U1P3011e-161A0A2U1P301_ARTAN; Zinc finger, C2H2-like, Zinc finger, double-stranded RNA binding protein
STRINGPGSC0003DMT4000271591e-121(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]