PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan003890
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 224aa    MW: 25523 Da    PI: 8.4668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41917264PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-140718PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000291702061354
                HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R+++++  ++Lre++P       k ++ +++  +Av+Y+ksL
  Aan003890 170 REKMRKMVNTLREIVPGG-----KQMNSVAVIDEAVKYLKSL 206
                7999************87.....67***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.293157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-5164212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-7165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-4167211No hitNo description
SuperFamilySSF474591.57E-7167213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQSDHQHLHS NTKLPLADQV GRGYIPNPHI ASFFSQNVDF QPSKICPRNF IIFDRTDNRS  60
QIMYHPAVSP GIVQPGTSYI EKNMLVRNNI NAPRELNSVM KEDSADIDLL LSFEEEDSEE  120
EYEEDELSTA LTHRNDLKDT ADSCSSRLVK SRLALSSFSR KSSGSSERKR EKMRKMVNTL  180
REIVPGGKQM NSVAVIDEAV KYLKSLKLEL QKVVCRNLKK LKLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.196940.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024982738.14e-89transcription factor bHLH144-like
TrEMBLA0A103Y1M09e-88A0A103Y1M0_CYNCS; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGXP_002519719.14e-51(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.21e-21bHLH family protein