PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan004043

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

DBB

Protein Properties

Length: 212aa MW: 23247.9 Da PI: 6.3833

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41932537	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-31014	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.4e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H Aan004043 4 LCDVCESAAAILFCAADEAALCRACDEKVH 33 7**************************998 PP
2	zf-B_box	24.9	4.1e-08	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++C +++ lC +C ++ H g H Aan004043 52 DVQRCDICENAPAFFYCGIDGSSLCLQCDMNVHVGgkrtH 91 5789****************************96545555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.5E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.153	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.8E-6	3	41	IPR000315	B-box-type zinc finger
CDD	cd00021	2.37E-7	3	45	No hit	No description
PROSITE profile	PS50119	8.574	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	1.1E-9	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.0E-5	53	91	IPR000315	B-box-type zinc finger
CDD	cd00021	4.37E-6	55	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SDVQRCDICE 60 NAPAFFYCGI DGSSLCLQCD MNVHVGGKRT HGRYLLLRQR VEFPGDRSGR DDELGLQPGD 120 PGGEVRREQN NQPKATTRDN QHHRLSAIGM LENNNDGAGR MENKLFDLNA RPQRMHGQTS 180 NNQEQGMDIS GSGNNDSASV VPVGSFKREA DK

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024990848.1	1e-135	B-box zinc finger protein 19-like isoform X1
Swissprot	C0SVM5	1e-82	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A2U1LAI4	1e-155	A0A2U1LAI4_ARTAN; Zinc finger, B-box
TrEMBL	A0A3S6E9H5	1e-155	A0A3S6E9H5_CHRMO; BBX19 protein (Fragment)
STRING	cassava4.1_016111m	1e-119	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	6e-85	DBB family protein