PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan004469
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YB
Protein Properties Length: 174aa    MW: 19241.4 Da    PI: 6.3592
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55083250PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-90911PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.25e-5826123198
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                vreqdrflPian+srimkk+lPan+k++kdaketvqecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy+eplk+yl++yre+eg++k
  Aan004469  26 VREQDRFLPIANISRIMKKALPANGKMAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLSRYREMEGDTK 123
                69*********************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5423137IPR009072Histone-fold
SuperFamilySSF471139.16E-4129135IPR009072Histone-fold
PfamPF008086.4E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-217997No hitNo description
PRINTSPR006151.3E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAEGPASPGG GSHESGGDLS PRSSNVREQD RFLPIANISR IMKKALPANG KMAKDAKETV  60
QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIEPLKL YLSRYREMEG  120
DTKGSGKGHE GSARKDGAQP DYREHLAHQG SYLQGLDYGN QQAQHMMVQM QGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A8e-4825117193NF-YB
4awl_B8e-4825117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A8e-4825117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.199020.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021973197.11e-108nuclear transcription factor Y subunit B-8-like isoform X1
RefseqXP_021973199.11e-108nuclear transcription factor Y subunit B-8-like isoform X3
RefseqXP_024977724.11e-109nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK49e-88NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1B0T7021e-126A0A1B0T702_CHRMO; NF-Y protein (Fragment)
STRINGXP_009620316.11e-101(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-90nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]