PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan005653
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 350aa    MW: 38269.9 Da    PI: 5.931
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-330160989PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.4e-18257290134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Aan005653 257 CMHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 290
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-711345IPR016679Transcription factor, GATA, plant
SMARTSM004017.1E-15251301IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.174255287IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15255314No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.64E-14256305No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15257290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSGQDFIEEI DCSSFFDHID DLIEFPQVND TSLDSVEYNE FNNIWTNNGG TDDLQVPDPI  60
FGGGNSDNAA ALSAELAVPY EDIVQLEWLS NFVEDSFSGG GMTINKETVP VQKETVVRHQ  120
FQTSSPVSVL ESSSSSSSSS SWSGSGGATG TMIPLSPIQR GPQRARSKRP RPATFNPRAM  180
IELLSPMILV PGSASSESEK NFASRCGPNL VIHGPDEKKK KKQKKPKILG PTEEIGNQNE  240
NQNHNQNQSG GQGVRKCMHC EITKTPQWRA GPLGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFIPTLHSN SHKKVVEMRT MFGPSDKMAI VKTEPEPELI PNMNPAVSYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167171KRPRP
2216225EKKKKKQKKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976958.11e-158GATA transcription factor 8-like
TrEMBLA0A2U1PNC90.0A0A2U1PNC9_ARTAN; GATA transcription factor
STRINGXP_009760862.11e-105(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-40GATA family protein