PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan005723
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 342aa    MW: 38164.6 Da    PI: 6.4225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-141662PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18257290134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  Aan005723 257 CTHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGR 290
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-8112337IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.517251287IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-13251301IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-14254314No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.73E-14256305No hitNo description
PfamPF003202.7E-16257290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEYCIEARAL KSSLLSQIKI SKQQINSSSS YDHQELWFNK NVVVNNHGSS DELFSIDDLL  60
DLSDKEEFKD ELEDFASVSS QDNDDSCNSM NSSSSSSSGD LVSLTGEGDD LPLPIDDMES  120
LEWLSTIVDD SMSEHNTLLF PPAKLKEVTM NRFEPVVSVA SHGFTVLGLP YPVPKKCRTE  180
RSRKAGRVWS SGSRSFTESS SNSSSSHDSS ITSPMLMMNP VYFTHLFEKQ PKVKKQRKNP  240
VQYNEPGSNE SLSQRRCTHC QVQKTPQWRT GPLGPKTLCN ACGVRYKSGR LFPEYRPACS  300
PTFSVEVHSN SHRKVLEMRK KKDVEVGVEP GFVNIAVQSA SS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.1150.0leaf| trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022011907.11e-132GATA transcription factor 7-like
TrEMBLA0A2U1M7410.0A0A2U1M741_ARTAN; GATA transcription factor
STRINGSolyc01g110310.2.12e-78(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.29e-51GATA transcription factor 5