PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan005828
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family E2F/DP
Protein Properties Length: 332aa    MW: 36758.2 Da    PI: 8.4672
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-44271PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.86.6e-2789168371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +++Lr++++k   ++ek+e+ g++t+neva+eLv+e              d+kn+rRR+YD+lNVL+a+++i+k +++ei+wkg
  Aan005828  89 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfrepcdgtpeqqqyDEKNIRRRVYDALNVLMAMDIISK-DRKEIQWKG 168
                689*******...*****999*****************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1163331IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.1E-4583173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3287168IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-2490168IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.06E-2190169IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.73E-41173276IPR014889Transcription factor DP, C-terminal
SMARTSM011381.4E-63175330IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.59E-41175285No hitNo description
PfamPF087811.1E-40176285IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVINKNQENA KTPSRGGGAT RSWGTTGSGQ SISGSSSIGS PSTRIEPTMA VTPSSASTKL  60
KLNSFESHGD VGSNKRKRVQ RASGPDKGNR GLRQFSMKVC EKVESKGRTT YNEVADELVA  120
EFREPCDGTP EQQQYDEKNI RRRVYDALNV LMAMDIISKD RKEIQWKGLP NSNLNDVHEL  180
KREHLAVRSR IDKKAAYLKE LQDQHVGLQN LVQRNEQLYR SGNAPDGGVA LPFILVQTRP  240
HATVEVEISE DMQLVHFDFN TTPFELHDDN YVLKQMKLCG QSASDDMGND VSTNGGEGSS  300
ISSMAMATMQ SERPAISHPV PGILKPRLKH EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-3681170190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744869.11e-163transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-135DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2U1NCE70.0A0A2U1NCE7_ARTAN; Winged helix-turn-helix DNA-binding domain, Transcription factor DP
STRINGXP_010241817.11e-156(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-125Transcription factor DP