PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan006266
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 297aa    MW: 33537.1 Da    PI: 6.6422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55197319PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-409160993PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-409160994PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.3e-092321848
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++G g+W++++++ g+ R++k+c++rw +yl
        Aan006266  2 RFGVGCWSSVPKHAGLQRCGKSCRLRWINYL 32
                     578899***********************97 PP
2Myb_DNA-binding47.73.6e-153882147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ 
        Aan006266 38 RGLFSQQEEDLILHLHQVLGNR-WAQIAAQLP-GRTDNEIKNYWNSC 82
                     7889******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.864132IPR017930Myb domain
SMARTSM0071785134IPR001005SANT/Myb domain
PfamPF002494.9E-7232IPR001005SANT/Myb domain
CDDcd001671.69E-4232No hitNo description
Gene3DG3DSA:1.10.10.602.2E-14239IPR009057Homeodomain-like
SuperFamilySSF466898.17E-221892IPR009057Homeodomain-like
PROSITE profilePS5129425.3633387IPR017930Myb domain
SMARTSM007171.6E-143785IPR001005SANT/Myb domain
PfamPF002494.8E-143882IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-264088IPR009057Homeodomain-like
CDDcd001671.01E-104180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
XRFGVGCWSS VPKHAGLQRC GKSCRLRWIN YLRPDLKRGL FSQQEEDLIL HLHQVLGNRW  60
AQIAAQLPGR TDNEIKNYWN SCLKKKLIKQ GIDPNTHKPV SDNNDVKDKK MEFFSSCSSS  120
MPMTAELDQS YHINNGGLIL SSSSSMENNP IRDTFLSKSV VDPLFLAEFQ SSIDPIGYNS  180
NLLAQYHQTN YETSLPNLAS FDHRNTSTEF SDHSGSKMSS STTNSSNINT SLSAGFQNMT  240
FEGEMFQFNG VNVKTEEGCV GQWQHHMHEV QVNNASDFNI YPMGTMPGEY TDVFHQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2428724108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739361.11e-165transcription repressor MYB6-like
TrEMBLA0A2U1NGA00.0A0A2U1NGA0_ARTAN; Homeodomain-like protein
STRINGEOY208356e-94(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-57myb domain protein 86