PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006288

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

SBP

Protein Properties

Length: 295aa MW: 33720.5 Da PI: 8.4097

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55106512	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-740160988	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	3.9e-41	187	264	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++ Aan006288 187 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVITAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSSQ 264 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-34	184	249	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.368	185	262	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.71E-38	186	265	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.0E-31	188	261	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
XNKETTTTML DYEWGNPSTM ILNGAVTVDD HHHTTSQPPS NHHTSRHFFD HYSHDQTFEH 60 NNTNTNTNNL NNNNTPYLNT SDHHFLNNPQ HNPYLNNNNQ THFPSLYDPR AYTSACTYAP 120 ALENPDQGYM IMPKVEPSNG CAIDFTNNRI GLNLGGRTYF SSAEDDFVNR LYRRSRPLDA 180 ALVSSPRCQA EGCNADLTHA KHYHRRHKVC EFHSKASTVI TAGLTQRFCQ QCSRFHLLSE 240 FDNGKRSCRK RLADHNRRRR KSSQNQDQSK SLVTVSSTQS SSSDIISRYH SDSRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	188	261	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during plant development. During pollen development, required for crosporogenesis that leads to archesporial formation and for the histogenesis of the microsporangia. During ovules development, involved in the transition to meiosis of the megaspore mother cells. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:12671094}.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apical region and early floral tissues. Transcripts levels increase in developing pollen sacs, and decrease in later stage of anther development. Strongly expressed in the placental region of the carpels. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:17093870}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747801.1	1e-134	squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	1e-77	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A2U1M710	0.0	A0A2U1M710_ARTAN; Squamosa promoter binding protein-like 8
STRING	POPTR_0014s05680.1	2e-90	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	6e-74	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]