PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan006361

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NAC

Protein Properties

Length: 290aa MW: 33863.4 Da PI: 8.3037

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-82396	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.4	7e-50	23	148	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101 pGfrFhPtdeelv +yL++kv++k+l++ + ik++diyk++PwdLpk+ + +++e yfF+kr +ky+++ r+nr+t+sg+Wkatg d++v+s+ ++ +g Aan006361 23 PGFRFHPTDEELVGFYLRRKVDKKPLNF-DLIKQIDIYKFDPWDLPKTSDMRDNERYFFCKRGRKYRNSIRPNRVTDSGFWKATGIDRPVYSStGSVCIG 121 9***********************99.99***********98888999**********************************955666 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkk+Lv+y+g+a kg+kt+W+mhe+rl Aan006361 122 LKKSLVYYRGSAGKGTKTEWMMHEFRL 148 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.005	21	179	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-54	21	179	IPR003441	NAC domain
Pfam	PF02365	3.7E-25	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDTEKMEVIS KRQVDEDENI PLPGFRFHPT DEELVGFYLR RKVDKKPLNF DLIKQIDIYK 60 FDPWDLPKTS DMRDNERYFF CKRGRKYRNS IRPNRVTDSG FWKATGIDRP VYSSTGSVCI 120 GLKKSLVYYR GSAGKGTKTE WMMHEFRLPP SSPKTINHMD DKSISQEAEV WTLCRILKRN 180 VSNRKIVPDW KELSIKRNPV VDAGSKSCSE DSDHEMKSYI SFQNPSIQLN HEKNLYDHTN 240 GMNHLTAISR FTDQAPSINL EMNEFIENGD WNDLRSVVEF AAADRPVFFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-45	23	185	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-45	23	185	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-45	23	185	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-45	23	185	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-45	23	185	22	174	NAC domain-containing protein 19
3swm_B	4e-45	23	185	22	174	NAC domain-containing protein 19
3swm_C	4e-45	23	185	22	174	NAC domain-containing protein 19
3swm_D	4e-45	23	185	22	174	NAC domain-containing protein 19
3swp_A	4e-45	23	185	22	174	NAC domain-containing protein 19
3swp_B	4e-45	23	185	22	174	NAC domain-containing protein 19
3swp_C	4e-45	23	185	22	174	NAC domain-containing protein 19
3swp_D	4e-45	23	185	22	174	NAC domain-containing protein 19
4dul_A	4e-45	23	185	19	171	NAC domain-containing protein 19
4dul_B	4e-45	23	185	19	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022039616.1	1e-146	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	6e-86	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2U1N8A0	0.0	A0A2U1N8A0_ARTAN; Elongation factor G, III-V domain-containing protein
TrEMBL	A0A2U1Q4S9	0.0	A0A2U1Q4S9_ARTAN; Elongation factor G, III-V domain-containing protein
STRING	cassava4.1_024488m	1e-113	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-88	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]