PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan006516
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 281aa    MW: 32399.3 Da    PI: 8.7733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55207876PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-91448PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-0946751948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +G g+W++ a+  g++Rt+k+c++rw++yl
        Aan006516 46 HGEGRWNSLAKSSGLKRTGKSCRLRWLNYL 75
                     999*************************97 PP
2Myb_DNA-binding47.83.3e-1582124246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+ +++E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
        Aan006516  82 GNLSPQEQLLILELHSKWGNR-WSKIAQQLP-GRTDNEIKNYWRT 124
                      6779*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.101.4E-17348IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.27E-18350No hitNo description
PROSITE profilePS5103911.502664IPR000058Zinc finger, AN1-type
SMARTSM001543.3E-13946IPR000058Zinc finger, AN1-type
PfamPF014285.3E-7944IPR000058Zinc finger, AN1-type
SMARTSM0071743177IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-2245122IPR009057Homeodomain-like
CDDcd001672.96E-44675No hitNo description
PROSITE profilePS500907.0624675IPR017877Myb-like domain
PfamPF002492.1E-74675IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-144982IPR009057Homeodomain-like
PROSITE profilePS5129423.72676130IPR017930Myb domain
SMARTSM007171.1E-1380128IPR001005SANT/Myb domain
PfamPF002492.4E-1482124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2283128IPR009057Homeodomain-like
CDDcd001675.74E-1085124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
XPKVGPSRCF TCRKRVGLTG FNCKCGDLFC SAHRYSDKHD CPFACHGEGR WNSLAKSSGL  60
KRTGKSCRLR WLNYLKPDVK HGNLSPQEQL LILELHSKWG NRWSKIAQQL PGRTDNEIKN  120
YWRTKVQKQA RYLKIDSNSK KFVEALKKFW LPRLLEKVEQ SSPSSSSTST TTMDAYQNNL  180
SHQALSNETL MENTYSSSSI CSLNSTKVVL PYLPESSIQS NGYFVDNNNF DVMSFNHLNM  240
QESLSSDMSA LDFQLAEVDW MNNELVDDTF WNMDELWQFR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-174613022105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-174613045128MYB TRANSFORMING PROTEIN
1mse_C2e-174613022105C-Myb DNA-Binding Domain
1msf_C2e-174613022105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976512.11e-119transcription factor MYB62-like
SwissprotQ9C9G74e-72MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2U1MUJ01e-171A0A2U1MUJ0_ARTAN; Myb domain protein 62
STRINGPGSC0003DMT4000377165e-80(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-72myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]