PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan007099
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 258aa    MW: 28867.7 Da    PI: 4.5107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41928127PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-4789PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS67.23.1e-21175258389
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                +lL+ecA a+s+g+ e+a++++++l++++s dg+p qR+ ay++eALaar+a s+++lykal+++e +   s+++l+a+++++ev+P
  Aan007099 175 DLLFECAVAISEGHIEEASNMINELRQTVSIDGEPSQRILAYMVEALAARVAASGKGLYKALKCKEPP---SKDRLSAMQVLFEVCP 258
                79*****************************************************************9...9**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.006147258IPR005202Transcription factor GRAS
PfamPF035141.1E-18175258IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
XCFNRTGLCG DHLTMIRSVS PYGNRKLYLL NEGKESSGIP TSLFNNDEQE RYSATQSYSS  60
ESYDPAKYFL DSPTEEHLSS LEPEYLLKEN FEGLSYDEHK MRLKLQELEH ALLDDGNENE  120
DSAPSRSMEI DGEWGYSVHE SPKESSSYDS YVSSNSSNKE VSLTTPRSRG NTPKDLLFEC  180
AVAISEGHIE EASNMINELR QTVSIDGEPS QRILAYMVEA LAARVAASGK GLYKALKCKE  240
PPSKDRLSAM QVLFEVCP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.205350.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973072.11e-112scarecrow-like protein 1
RefseqXP_024973073.11e-112scarecrow-like protein 1
RefseqXP_024973074.11e-112scarecrow-like protein 1
RefseqXP_024973075.11e-112scarecrow-like protein 1
RefseqXP_024973076.11e-112scarecrow-like protein 1
SwissprotQ9SDQ31e-56SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2U1PLG51e-173A0A2U1PLG5_ARTAN; GRAS protein
STRINGPOPTR_0002s07430.12e-67(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.12e-52SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]