PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan007161
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 256aa    MW: 27270.1 Da    PI: 7.0477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41962193PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-1187111327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   C+ff++t  Ck+G++CkF+H++
  Aan007161  87 VQDCPFFLKTQKCKFGPSCKFNHPK 111
                678********************96 PP
2zf-CCCH43.84.2e-14133157327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+f+++tG CkyG++CkF+H++
  Aan007161 133 EPPCSFYMKTGVCKYGSTCKFHHPK 157
                79*********************96 PP
3zf-CCCH361.2e-11207233127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C+f+++tG Cky ++C+++H++
  Aan007161 207 PGEVDCPFYLKTGSCKYSATCRYNHPE 233
                57899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-584111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.74684112IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-986111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-687113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-490110IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882130158IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-11133157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-6135156IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267206234IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5210233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4212233IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
XASSDPSYYT SSRIPGASDP LTSSFNYSSM YGNNKDSMAG RSTLWNGGPP GVDLNSSVDS  60
IYAVLSDRLP KVPVTDTSEP LPERQGVQDC PFFLKTQKCK FGPSCKFNHP KDKAATTSAL  120
ENEGSELPER PSEPPCSFYM KTGVCKYGST CKFHHPKDIV VAIGGVGDTN GEQIEGVTGG  180
TSGSLAPSNP PVTPALLHNS KGLPIRPGEV DCPFYLKTGS CKYSATCRYN HPERYAMDPP  240
AAIAATSALH MNLGLX
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021993458.19e-85zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_021993459.17e-85zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q38e-61C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2U1NM011e-141A0A2U1NM01_ARTAN; Floral homeotic protein (HUA1)
STRINGPOPTR_0008s07980.12e-74(Populus trichocarpa)
STRINGXP_010260864.11e-73(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-63floral homeotic protein (HUA1)