PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan007207
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 255aa    MW: 27840.4 Da    PI: 10.4267
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55101569PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-81356PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.9e-18163196134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C  tkTp+WR gp g+k+LCnaCG++y++ +
  Aan007207 163 CMHCEITKTPQWRAGPMGPKSLCNACGVRYKSGR 196
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.1E-16157207IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121161193IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15161220No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14161194IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.88E-14162219No hitNo description
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15163196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
XFVEDSFSGX GMTMNKENVP VKKESLVVPN YQFQMSSPVS VLESSSSSSS SSSSSGSGGK  60
MIPLSPVHRG PQRARSKRPR PPTFKPRGAI ELLSPSMLVS VPVSLASESF IESHSGPKFG  120
GVGPDQKKRK KKAKKPDAPF NPENQNENQI QNQNQTGQGV RKCMHCEITK TPQWRAGPMG  180
PKSLCNACGV RYKSGRLFPE YRPAASPTFI PTVHSNSHKK VVEMRTKCLP NDIMLALPEP  240
EPALIPNMNP PADYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KRPRP
2126130KKRKK
3126134KKRKKKAKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024970508.11e-109GATA transcription factor 8-like
RefseqXP_024970509.11e-109GATA transcription factor 8-like
TrEMBLA0A118K4221e-107A0A118K422_CYNCS; Zinc finger, GATA-type (Fragment)
STRINGXP_009760862.12e-73(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-40GATA family protein