PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan007319
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 251aa    MW: 28211.9 Da    PI: 5.1184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41970859PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-1682127147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+++Ed ll ++v  +G+++W++Ia+ +  gR++k+c++rw + 
        Aan007319  82 KGPWSPQEDSLLSKLVFTFGPRNWSLIAKGVS-GRSGKSCRLRWCNQ 127
                      79******************************.***********985 PP
2Myb_DNA-binding569.1e-18134178147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eE+ +++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
        Aan007319 134 RKPFTHEEERIILSAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 178
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.56877128IPR017930Myb domain
SMARTSM007175.1E-1481130IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-2981175IPR009057Homeodomain-like
PfamPF002495.4E-1682127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-2583135IPR009057Homeodomain-like
CDDcd001675.06E-1384126No hitNo description
PROSITE profilePS5129425.153129183IPR017930Myb domain
SMARTSM007171.8E-16133181IPR001005SANT/Myb domain
PfamPF002491.4E-15134178IPR001005SANT/Myb domain
CDDcd001672.39E-12136179No hitNo description
Gene3DG3DSA:1.10.10.601.6E-23136182IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEKYGGEQIP TTTTAQQQQQ QEEKEKDLVT NHETAEQQQE LLVEDDDDDD DESEEEEEEN  60
NNIKKKKIKR KYVIGGGECR VKGPWSPQED SLLSKLVFTF GPRNWSLIAK GVSGRSGKSC  120
RLRWCNQLDP ALKRKPFTHE EERIILSAHA IHGNKWAAIA RLLPGRTDNA IKNHWNSTLR  180
RRGVGFGRFN IGSGNTMDEA ATASIDRSKA SSEETLSCGD VNSFKCVDGV DVTSDHYVEX  240
SQLNSDPPTL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-40811823104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024981890.12e-91transcription factor MYB1-like
SwissprotQ425752e-54MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2U1KMD91e-144A0A2U1KMD9_ARTAN; Homeodomain-like protein
STRINGAquca_009_00809.12e-80(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.18e-59myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]