PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan007473
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 247aa    MW: 27441.1 Da    PI: 5.2493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-158522PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-09955345
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                      WT e d  + +a+  ++ +    +W++Ia++++  ++++++k+++ 
        Aan007473  9 VWTREQDVAFEEAIVTYPDEddeeRWEKIAAEVPGDKSAEEIKNHYE 55
                     7*****************99**************99*********96 PP
2Myb_DNA-binding45.32e-14118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
        Aan007473 118 AWTEEEHRLFLLGLEKYGKGDWRSISRNYVVTRTPTQVASHAQKY 162
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.926562IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.5E-4555IPR009057Homeodomain-like
SMARTSM007173.8E-8660IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-9866IPR009057Homeodomain-like
PfamPF002492.6E-7955IPR001005SANT/Myb domain
CDDcd001671.04E-71058No hitNo description
PROSITE profilePS5129417.806111167IPR017930Myb domain
SuperFamilySSF466892.62E-17113168IPR009057Homeodomain-like
SMARTSM007172.3E-11115165IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.3E-18115165IPR006447Myb domain, plants
PfamPF002492.2E-12118162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-11118161IPR009057Homeodomain-like
CDDcd001672.06E-11118163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVEETKESVW TREQDVAFEE AIVTYPDEDD EERWEKIAAE VPGDKSAEEI KNHYELLVED  60
VERIDSGVVP LPVYSSSMDD SESQAGEGGT GKKRGQNGSE SNHGKASKSE QERRKGIAWT  120
EEEHRLFLLG LEKYGKGDWR SISRNYVVTR TPTQVASHAQ KYFIRLNSIN NKDRRRSSIH  180
DITSVNNGDV SVPQPPTNDS PGKSTKQQPI YGSQPVVGTP VNLAPGFSVG TPVGVPPNID  240
PRGSRHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1210971189RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021986305.11e-136transcription factor SRM1-like
SwissprotQ9FNN62e-90SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2U1NKD91e-179A0A2U1NKD9_ARTAN; Duplicated homeodomain-like superfamily protein
STRINGXP_008221083.13e-98(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-93MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]