PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan007549

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 245aa MW: 27778.2 Da PI: 9.9034

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-16700	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.7	5.6e-13	37	78	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+W++eEde l+++++++G++ W++ + ++ gR+++ c+ rw+ Aan007549 37 GAWSPEEDEMLLNLFEKHGPN-WSLNGKSIP-GRSANTCRVRWF 78 89***************77.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.578	31	83	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-18	34	124	IPR009057	Homeodomain-like
SMART	SM00717	8.1E-8	35	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-13	37	79	IPR009057	Homeodomain-like
Pfam	PF00249	5.9E-12	37	78	IPR001005	SANT/Myb domain
CDD	cd00167	1.67E-9	38	77	No hit	No description
PROSITE profile	PS51294	9.791	85	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-11	85	131	IPR009057	Homeodomain-like
SMART	SM00717	1.1	85	130	IPR001005	SANT/Myb domain
CDD	cd00167	0.0076	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MKNKTSLSKY RLRKKKGLRL AMPVNNSQKK DMDQIEGAWS PEEDEMLLNL FEKHGPNWSL 60 NGKSIPGRSA NTCRVRWFSS PQVMPFTPEE DHAILLSHAY YGDKWVSIAK NLIGRPHDVI 120 LNHWNSTLKR KSSSMTNEAK IPPAFVSDIN YGQGNSYIHD WNISLEVAPS ISDMARDNMS 180 SGGTHSCSRD ESAPSRDAFN KRESSPMMTD SDDSSEVSSF EPVRPSRLSR FSSKKRAKMS 240 RFFEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-20	35	131	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-20	35	131	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-20	35	131	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-20	35	131	3	104	C-Myb DNA-Binding Domain
1msf_C	1e-20	35	131	3	104	C-Myb DNA-Binding Domain

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2U1L2L2	1e-147	A0A2U1L2L2_ARTAN; Transcription factor MYB44-like protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	3e-38	myb domain protein 70