PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008151
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 227aa    MW: 25559.5 Da    PI: 8.2735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-36160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-163782147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v  +G+++W+++++++  gR++k+c++rw + 
        Aan008151 37 KGPWSAEEDRVLTRLVDTYGPKNWSLVSKYIK-GRSGKSCRLRWCNQ 82
                     79*****************************9.***********985 PP
2Myb_DNA-binding49.11.3e-1591133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++  Ede  + a++q+G++ W+tIar ++ gRt++ +k++w++ 
        Aan008151  91 PFSVSEDETTLAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 133
                      78999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9263287IPR017930Myb domain
SuperFamilySSF466893.44E-3034130IPR009057Homeodomain-like
SMARTSM007175.5E-153685IPR001005SANT/Myb domain
PfamPF002493.3E-163782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223889IPR009057Homeodomain-like
CDDcd001671.78E-133981No hitNo description
PROSITE profilePS5129418.88688138IPR017930Myb domain
SMARTSM007179.6E-1388136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2190137IPR009057Homeodomain-like
CDDcd001672.12E-1091134No hitNo description
PfamPF002493.4E-1291133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEPLNRCSSA TSPSSESTDS SYSGLKPEYS NKTSKIKGPW SAEEDRVLTR LVDTYGPKNW  60
SLVSKYIKGR SGKSCRLRWC NQLSPNVQHR PFSVSEDETT LAAHAQYGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRKVD TQEMMLFSFG ENGCRSSPSV SNENVGTDVE DPMTTLSLGL  180
PGMGECRRPE KSTECVQEGF WNVMRGVVER EVREYVSTSY CDNQGFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40361373104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-40361373104C-Myb DNA-Binding Domain
1msf_C3e-40361373104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.46240.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728527.11e-102transcription factor MYB77-like
TrEMBLA0A2U1LEW61e-141A0A2U1LEW6_ARTAN; Homeodomain-like protein
STRINGXP_004291141.11e-85(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-55myb domain protein r1