PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008203
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26044.1 Da    PI: 9.0911
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55202192PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-106861PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krie+k+ rqv+fskRrng++KKA+EL  LCd++va+++fs +gklye+s+
  Aan008203  9 KRIEDKTCRQVSFSKRRNGLMKKAYELAELCDVDVALLVFSARGKLYEFST 59
               79***********************************************96 PP
2K-box16.63.3e-071031693399
      K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  qRhl  +++++L++  L qL qqL++ l++++ +K+el +  ++ lq +e +l++e k++  +++
  Aan008203 103 MIQRHLEENNIKRLDITGLDQLVQQLNSFLQQVKIRKMELKMGVLKALQDQEMQLKKERKDMMDQIM 169
                5689********************************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.459161IPR002100Transcription factor, MADS-box
CDDcd002651.95E-38274No hitNo description
SuperFamilySSF554556.15E-30280IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.16184174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKVELKR IEDKTCRQVS FSKRRNGLMK KAYELAELCD VDVALLVFSA RGKLYEFSTG  60
DSMAEILTRY QNYKMEKLKR VIVQERLAPQ YSDVYTADEL TEMIQRHLEE NNIKRLDITG  120
LDQLVQQLNS FLQQVKIRKM ELKMGVLKAL QDQEMQLKKE RKDMMDQIMA MDRINNDTDA  180
AEPQPPVMGV QITXVMGANI RQYLSTYLCV RSAGVPPRLV QLHTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-18173172MEF2 CHIMERA
6bz1_B2e-18173172MEF2 CHIMERA
6bz1_C2e-18173172MEF2 CHIMERA
6bz1_D2e-18173172MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024969701.12e-75truncated transcription factor CAULIFLOWER A-like isoform X2
TrEMBLA0A2U1PYD23e-81A0A2U1PYD2_ARTAN; Transcription factor, K-box
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.11e-40MIKC_MADS family protein