PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008548
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NAC
Protein Properties Length: 214aa    MW: 24456.9 Da    PI: 8.8429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55032236PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-138218PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-284160991PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.11.5e-48141371128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelv +yL +k+++ +++l   i+e+d+++++PwdLp      e+e yfFs+ + ky++gkr+nr+t+sgyWkatg dk+++ + +++l
  Aan008548  14 LPPGFRFHPTDEELVIHYLYHKAQSLPMTL--PIPEADVCRSDPWDLPGD---LEQERYFFSTMEIKYPNGKRANRTTTSGYWKATGLDKRIIGSqNKQL 108
                79*************************888..7***************54...46799*********************************998757888 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +g+kktLvfy+g+ p+g+kt+W+mhey+l
  Aan008548 109 IGTKKTLVFYRGKPPHGSKTNWIMHEYKL 137
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5510155IPR003441NAC domain
PROSITE profilePS5100553.22914155IPR003441NAC domain
PfamPF023651.4E-2615137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTNLNFVENG ALRLPPGFRF HPTDEELVIH YLYHKAQSLP MTLPIPEADV CRSDPWDLPG  60
DLEQERYFFS TMEIKYPNGK RANRTTTSGY WKATGLDKRI IGSQNKQLIG TKKTLVFYRG  120
KPPHGSKTNW IMHEYKLASH NKDMGNWVLC RMFLKKGAKN CGMKDEEMLK VEKTRPVLYE  180
FIGGTRKFDL NLEGDVSSSC SSGVTKADED EVNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-461215818171NAC domain-containing protein 19
3swm_B3e-461215818171NAC domain-containing protein 19
3swm_C3e-461215818171NAC domain-containing protein 19
3swm_D3e-461215818171NAC domain-containing protein 19
3swp_A3e-461215818171NAC domain-containing protein 19
3swp_B3e-461215818171NAC domain-containing protein 19
3swp_C3e-461215818171NAC domain-containing protein 19
3swp_D3e-461215818171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.62680.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024993892.18e-93NAC domain-containing protein 83-like
SwissprotQ9FY933e-78NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2U1NR011e-157A0A2U1NR01_ARTAN; Uncharacterized protein
STRINGGLYMA18G53954.15e-85(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-80NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]