PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008659
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 210aa    MW: 22945.6 Da    PI: 8.5993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41970925PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.3e-124975127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++rtGtC yG++C+++H+p
  Aan008659 49 PGMPDCAYYMRTGTCGYGSKCRYNHPP 75
               5789*********************97 PP
2zf-CCCH43.74.6e-1497123127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++++rtGtCk+G++CkF+H++
  Aan008659  97 PGEPPCQYYLRTGTCKFGASCKFNHPR 123
                5899*********************96 PP
3zf-CCCH38.71.6e-12144169227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG+Ck+G +CkF+H+p
  Aan008659 144 DEKECSYYLKTGQCKFGITCKFHHPP 169
                6789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1034876IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-105075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-55474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.61596124IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-796123IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1198123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6101124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6143170IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5144169IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-10144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4148167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEMYGRDHNQ QQSEWIQQPT GSETGIEESM RRLGLLGGRG GGEFYPERPG MPDCAYYMRT  60
GTCGYGSKCR YNHPPDRTTS AGGAARTPGV GGYPERPGEP PCQYYLRTGT CKFGASCKFN  120
HPRHAGGSLS NVPLNTYGYP LRPDEKECSY YLKTGQCKFG ITCKFHHPPP TGESVPASAR  180
PFYSTVQSPS APSPEQYAGP SAGYRVARPP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024975712.11e-116zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W911e-78C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2U1MX321e-148A0A2U1MX32_ARTAN; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGevm.model.supercontig_9.1861e-89(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-76C3H family protein