PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008669
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 210aa    MW: 24048.8 Da    PI: 6.2545
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55198848PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-124403PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.84e-11751345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+  Ed+l+ da  +++ +   +W +Ia+ ++ g+t++++++++ 
        Aan008669  7 TWSRYEDKLFEDALVMYPEDvtgRWQKIAASVP-GKTAEEVRNHYE 51
                     7********************************.**********96 PP
2Myb_DNA-binding44.34.2e-14111155347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Aan008669 111 PWTEEEHRLFLIGLQRYGKGDWRSISRNVVVSRTPTQVASHAQKY 155
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.748158IPR017930Myb domain
SMARTSM007178.2E-9456IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-12662IPR009057Homeodomain-like
PfamPF002491.0E-9751IPR001005SANT/Myb domain
CDDcd001674.24E-8754No hitNo description
Gene3DG3DSA:1.10.10.603.9E-6750IPR009057Homeodomain-like
PROSITE profilePS5129419.728104160IPR017930Myb domain
SuperFamilySSF466893.38E-17106161IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-18107159IPR006447Myb domain, plants
SMARTSM007177.3E-11108158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-12108154IPR009057Homeodomain-like
CDDcd001679.23E-9111156No hitNo description
PfamPF002497.3E-12111155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MYQNESTWSR YEDKLFEDAL VMYPEDVTGR WQKIAASVPG KTAEEVRNHY ELLVHDLVLI  60
DSGRVELPSY ADDGVGENDE MYVSWDNELR ASQISFGGVK NKEGERKKGT PWTEEEHRLF  120
LIGLQRYGKG DWRSISRNVV VSRTPTQVAS HAQKYFLRQN SMKKERKRSS IHDITTTTDT  180
VAVPPPPPAN FQGGATQMGY EHQQSYGYPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-158741177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024970615.11e-123transcription factor SRM1-like
SwissprotQ9FNN66e-59SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2U1PQ611e-156A0A2U1PQ61_ARTAN; Uncharacterized protein
STRINGXP_009796939.17e-89(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-70MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]