PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan008801

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 205aa MW: 22829.7 Da PI: 4.5554

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41934198	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-38829	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.9	6.2e-10	23	62	2	40
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqc 40 ++W t E++ll+ av+++G+++W++Ia+++ + + +q+ Aan008801 23 DAWGTSEELLLASAVNRYGTKNWDLIASEIKiRTASSNQI 62 58****************************9777777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.56E-6	20	62	IPR009057	Homeodomain-like
SMART	SM00717	8.8E-7	21	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-6	24	82	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-9	24	62	IPR001005	SANT/Myb domain
CDD	cd00167	7.23E-8	24	77	No hit	No description
PROSITE profile	PS50090	6.156	25	77	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAVDNTPSST AKSDHHHHAP PPDAWGTSEE LLLASAVNRY GTKNWDLIAS EIKIRTASSN 60 QIYFTPVHCQ QKYKELKRRF NDDNDDDVTD DVISIPWLDD LKKERIVWLQ NHLQNLDPRI 120 SSLQLTVKKL KEEREKPAEK AEPVAVVSSG TGEDESDRSV NGSNGNVETN EPEKSPVRTG 180 EEKPVGSEPV KSEPGGNESE EGDDX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021972256.1	9e-46	uncharacterized protein LOC110867585
TrEMBL	A0A2U1NP53	1e-116	A0A2U1NP53_ARTAN; DNA-binding bromodomain-containing protein
STRING	Gorai.006G142400.1	3e-34	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	1e-17	DNA-binding bromodomain-containing protein